riok2 (riok2)


Basic Information

Item Value
gene id riok2
gene name riok2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18232728 ~ 18237999 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804525.1
CGTAAACCTGAAGTGACGTTTCTCCGTTCCTCGAACTTCCGCCTTGCACGTGTGTTTACTAAAAATGTGGACTACTGAGCCTAAGAAGTACCAGTAATAATATTCTAAACACACTCGCTAACTGTTTGTTATCCGGTTGAAAACATGGGGAAGCTGAATGTCGTGGTGTTGAGATACTTATCTCGAGATGACTTCCGAGTCCTCACAGCGGTTGAGATGGGGATGAAGAACCATGAGATTGTCCCAGTGAGTCTCCTGTCGTCCATCGCTAGCCTCAAACACGGCGGCTGCAACAAGATCCTCAGAGAGCTTGTCAAACACAAACTTGTGGCCTATGAACGCAACAAGACTGTGCAGGGTTACAGGTTGAATAACGGAGGATATGACTACTTGGCTCTGAAGACGTTGTGTTCCAGAGAGGTGCTCATTTCAGTTGGCAACCAGATGGGTGTGGGCAAAGAGTCAGatatatatattgtgGCGAGCCCAAACAATGAGCAGTACGCGCTGAAGCTTCACAGATTGGGTCGTACCTCCTTCAGGAACCTGAAGAACAAGAGAGATTACCACCAACACAGGAAAAGCATTTCCTGGCTCTACCTCTCTCGCCTTTCTGCCATGAAGGAGTTTGCCTACATGAAGGCATTGTATGATCGGGGATTTCCTGTTCCCAAACCTGTGGACTATAACAGACATGCTGTAGTGATGGAGTTCATCAATGGATATCCACTGTATCAGGTGCATGAGCTGCAGGATCCACCTGCACTGTACAATGAGTTCATGGAGCTCATAGTCAAACTGGCCAATCACGGCCTGATTCACGGAGACTTTAACGAGTTCAACCTTATGCTGGACGACCACGACCACATAACTATGATTGACTTCCCTCAAATGGTGTCCACCTCACATCCTAATGCTGAATGGTATTTTGACAGAGATGTCAAATGTATCAAAGATTTCTTTGCCAAACGATACAATTACGAGAGCGCGGTCTTCCCAACCTTCAAAGATATCAGGCGGTCTTATTCTCTAGATGTCGAAGTCTCAGCTAGTGGCTTCACTAAGGATCTGGAGAGAGATGCTGCGTTGCTACACCCAGCCGGacctgaggaagaggaagatgacGAAGAGGAGGGTGATGACGAAGAGACCACAGATGAAGAGGTAGAAAAAGAGAGTGTGGACATGGAGGAATATAAGCATGCAATGCTGGAACTGGAAGGACTGAAAGTCAGCGACTCACATGCAGACATAGAAGATAAGGAGAACGAGAGTGAAAAAGGGGAAGAACAAAAAGGAACTGAGACATCTACTGGCAGAAGTGATGAAGACAAGGACTTGGAGGAAGAGTTGAATGAGGCAGAGGATGAGTGTCCAGAGCTGGCAGACCTTTCCGCCTCCAACAAAGAGTTCAAACCCTTCAGAGACTCAGACAGTCTTCTACATATGGCAGAACACAGGAGGATGAGGACAGACAGTGAGGGTACAATGGGCAGTATAGGGAGCTGCTCTACCATACCACCAGAGGTAGTCCGTCAGAAGGTGCGGAGGCAGCTCACCAAACAACAGAAGACGGCACAGAGGAGACGTCTGCAGAAGGGAGAAGCCAACTTAGTGACCAAATCCAGGAGAGAAAACCAAGATAACATCAAATCTAGTATGGAGACCGCCTCTTTCTGGGGATAAATGGGACTGCAGAGATGGACAGAATTCAtgtcaacattttgttttgtatggTTAAAGCATGC

Function

symbol description
riok2 Predicted to enable protein kinase activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to act upstream of or within protein phosphorylation and ribosome biogenesis. Predicted to be part of preribosome, small subunit precursor. Predicted to be active in cytosol and nucleus. Orthologous to human RIOK2 (RIO kinase 2).

NR:

description
serine/threonine-protein kinase RIO2

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K07179 RIOK2; RIO kinase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804525.1 True 1748 mRNA 0.47 10 18232728 18237999

Neighbor

gene id symbol gene type direction distance location
slc14a2 slc14a1,LOC100693008,LOC103357096 coding upstream 93394 18133647 ~ 18139334 (+)
tent2 NA coding upstream 234347 17991866 ~ 17998381 (+)
LOC120560642 LOC103357080,LOC100694356,LOC102778564,LOC102192834 coding upstream 265241 17952081 ~ 17967487 (+)
LOC120560760 LOC104943387 coding upstream 282671 17945795 ~ 17950057 (+)
kif2a kif2a coding upstream 299300 17914936 ~ 17933428 (+)
LOC120560024 lix1 coding downstream 1309 18239308 ~ 18244773 (+)
epg5 epg5 coding downstream 7502 18245501 ~ 18268581 (+)
dnajb5 dnajb5,LOC102783367 coding downstream 32720 18270719 ~ 18280112 (+)
akr1a1a LOC103357443,LOC100534433 coding downstream 44371 18282370 ~ 18287282 (+)
LOC120560506 nefh,LOC102784691 coding downstream 68899 18306898 ~ 18311633 (+)
G62406 NA non-coding upstream 104983 18127536 ~ 18127745 (+)
G62372 NA non-coding upstream 176579 18054799 ~ 18056149 (+)
G62344 NA non-coding upstream 291882 17939027 ~ 17940846 (+)
G62294 NA non-coding upstream 418915 17813589 ~ 17813813 (+)
G62280 NA non-coding upstream 474671 17757855 ~ 17758057 (+)
G62484 vcp,LOC102783844,LOC103357444,LOC107746855,LOC107393925 non-coding downstream 55261 18293260 ~ 18296903 (+)
G62502 thoc5 non-coding downstream 75212 18313211 ~ 18314777 (+)
G62508 NA non-coding downstream 82644 18320643 ~ 18321158 (+)
G62533 NA non-coding downstream 127281 18365280 ~ 18388485 (+)
G62540 NA non-coding downstream 219499 18457498 ~ 18459249 (+)
setbp1 setbp1,LOC102781608 other upstream 103659 18074768 ~ 18129069 (+)
thbs4a thbs4,LOC104953147,LOC106958346 other upstream 203342 18015405 ~ 18029386 (+)
cmya5 cmya5,LOC106958347,LOC104953151 other upstream 221698 17998686 ~ 18011030 (+)
tmem167a tmem167a,LOC103397084 other upstream 660023 17568013 ~ 17572705 (+)
LOC120560947 edil3 other upstream 818133 17285648 ~ 17414595 (+)
G62513 NA other downstream 92706 18330705 ~ 18331230 (+)
tbx5b tbx5,LOC103470367 other downstream 169349 18407348 ~ 18419590 (+)
tpcn1 tpcn1 other downstream 203348 18441347 ~ 18474731 (+)
acacb acacb other downstream 423158 18661157 ~ 18685463 (+)
mvk mvk,LOC102798305 other downstream 499519 18737518 ~ 18742399 (+)

Expression


Co-expression Network