ccdc92 (ccdc92)


Basic Information

Item Value
gene id ccdc92
gene name ccdc92
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 2037572 ~ 2054481 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804564.1
TAGCACGTCCCTGACAATCGCTGCTTCAACATTTCATCTCAAATAAGCTCAGGGAGATGATAGGAACTGACACAACCAGCCACCCTCCCCTCTCACCCGACCAAGGCGAGCCCCTGACAGCATCACCGACATGCCCCGCAAGGCAGAACGCTCTTAGTCGGTGAGGCCAGTCTATGTTCAGCGACAATTGACAACATTTTGCAAGATATTCGACGGCAGCGTATTTTTAGCCATAAGGTTGCAAggctggtgtgtgtctgtctgaacaTAATCAGCCATGGCATCAGCAAATGTTACACTGGAAAATCAGCTGCACAGTGCGCAGAAAAACCTGCTCTTCCTCCAGCAGGACCATGCCAACACGTTGAAGGGGCTACACGCAGAGATCCGCAGATTACAACAGCAATGCACAGATCTGACCTATGAGCTTACTGTGAGAAACTCTGATCCCTCAGaCAGCAGTGAGGCCCGCTGCAGGGAGCTGCAAAGGAGGTGTGAGGAGCTGGAGGCCCACCtcaagaagaaggaggaggagaacacAGAGCTGCTCAGGGACCTTGAGCAGAAGAACGCCATGATCTCTGTCCTGGAGAACACCattaaggagagagagaagaagtaCCTGGAGGAACTCAAGATGAAGAGCCACAAGCTGGCTGTTTTGTCCGGCGAGCTGGAGCAGAGAGCGAGCACTATTGCTTACCTCACCTCACAGCTTCACGCCACCAAGAAGAAGCTGTTAGCCGGCAGTTCATCCGAGGCCAGCCCCAACGTCAGTCCGGTCACCTCGTACAAGCCCACGCCTCCGCCGGCCAAGGACAGGCAGCCTGAAACCCCACGGCGTCGCATGAAGAAGAGTCTCTCCCAGCCTCTTCACCCAGAGTTAACAGAGGTGTATCGGCTCGGCCCGGACGGTAGACGGCTGGTTCTGCGGGAGACAGTAGATGCCATGCCTGACCCCACACCCTTCCTTCAGGCTGGGAGAGACTCTCCCGAACCGCAGGTAGTGCGAGAACGGCCTGCCGTTATCCCTCCTATTGCCTCAGAGCGCTCCCCTGTGGCTCCCCTGGGTGCTACGGCCAGCCCTCGTCACAGCCCCGCTCGGGACCGTCAGTACAGGGCTCACGTGGGCGTGGCGCATCGCATCCCACATGGCACCCCTCCCCTGGCTCCACCGCTAGCAGAGCTGGAGACACTGGCAGTGGACCAGGTCAAAGACGAAAAGGTTGTGCGGAAGCGCTCAGGAGCCGACAGGACAGTTTAACACTGCAACGCTAACATGCAcataaacgcacacacacatctactgTATACACATACTGCAAGAGCAGGAAGGAGCCTGACCCACTGTGTAGCTTGCTTTTTACGCAACACTgcaatatgaaaaaaaagtacataatTATTTTGTTCACGGTATCCCATAAAGACTTGCGTCTTTCTTGATCTACATTAGAAAAGGACTACTATAAAGCATGCCAAATGTTTCTTATTTACAACCCAATGAGATCTTGTATTATACACATCTTACTTATTCCAcaacgctgtggagataggtctggcaatgcgagactatacaCACCTTGACTTTTTTGCTTACACTTTCTCTTCATTCTGTCTTATGTGGTGCATACAACGAATCCTCAGCCAAATATCTGCATCAGTGCCTGCTCGACCGGATCAACCATACACAAGCTGTGTAGTGTAGTCATGGCTCATATATCTCTGTCTGCTCCATGTTCTCAACAGTCTGGACATATCAACAAACTATATAACAAGATGTCTGCAGCTGCATAGGGTAGAAGTGAAATTATTAAACTAATATTTCCCGAATGTCTTTTCATCTTCTTGTGATATCAGTATAATAACGTTACTGTTAAGTACAAGCTGCATAATGTGCAATTGAGATGTGCTGGCGAAAGGTGAAAGAGCTGTAATTTCACCTTTCTTTTGTTGGCTTGCAAAAACAGAAGCGGCGCACATGTGTAAATGCAGCGTGAAAGCATGGTGAACCAGacgtacatttgtgtgtgtgtgtgcgtgtgcgtgtgcgtgtgcgtgtgtgtgtgcgtgtgtgtgtgtgagagagagggagagagaaaatgtgtgtgtttcagagagaGACAATGAAGGCCATTGAGAGAATTAAGTTCTGGCTTAAACAATATCCGTTGAAGTTATTTGTGATACAAGggcatttttgaaaacactgcTGTAATAGGATTTTGTGACAATATTACCTGTACTTTATAAAGGCTGTGCATTTGTaatgaattcttttttttaatttattgtttaATAGGGAACACAAAATAACCTCAAATATTGACAGTAATCACTGCACCACCAACATGACGGTAATTATAATCAATTAATAACCTGCTTTTCAAATTAATATCACGTGTCCTTGAAGTTAACGTATGATTCAATACAATAAAGCAATGcatttttggtttgg
>XM_039804565.1
GCAGTTTACAAAAAATCAGGTTGCAAggctggtgtgtgtctgtctgaacaTAATCAGCCATGGCATCAGCAAATGTTACACTGGAAAATCAGCTGCACAGTGCGCAGAAAAACCTGCTCTTCCTCCAGCAGGACCATGCCAACACGTTGAAGGGGCTACACGCAGAGATCCGCAGATTACAACAGCAATGCACAGATCTGACCTATGAGCTTACTGTGAGAAACTCTGATCCCTCAGaCAGCAGTGAGGCCCGCTGCAGGGAGCTGCAAAGGAGGTGTGAGGAGCTGGAGGCCCACCtcaagaagaaggaggaggagaacacAGAGCTGCTCAGGGACCTTGAGCAGAAGAACGCCATGATCTCTGTCCTGGAGAACACCattaaggagagagagaagaagtaCCTGGAGGAACTCAAGATGAAGAGCCACAAGCTGGCTGTTTTGTCCGGCGAGCTGGAGCAGAGAGCGAGCACTATTGCTTACCTCACCTCACAGCTTCACGCCACCAAGAAGAAGCTGTTAGCCGGCAGTTCATCCGAGGCCAGCCCCAACGTCAGTCCGGTCACCTCGTACAAGCCCACGCCTCCGCCGGCCAAGGACAGGCAGCCTGAAACCCCACGGCGTCGCATGAAGAAGAGTCTCTCCCAGCCTCTTCACCCAGAGTTAACAGAGGTGTATCGGCTCGGCCCGGACGGTAGACGGCTGGTTCTGCGGGAGACAGTAGATGCCATGCCTGACCCCACACCCTTCCTTCAGGCTGGGAGAGACTCTCCCGAACCGCAGGTAGTGCGAGAACGGCCTGCCGTTATCCCTCCTATTGCCTCAGAGCGCTCCCCTGTGGCTCCCCTGGGTGCTACGGCCAGCCCTCGTCACAGCCCCGCTCGGGACCGTCAGTACAGGGCTCACGTGGGCGTGGCGCATCGCATCCCACATGGCACCCCTCCCCTGGCTCCACCGCTAGCAGAGCTGGAGACACTGGCAGTGGACCAGGTCAAAGACGAAAAGGTTGTGCGGAAGCGCTCAGGAGCCGACAGGACAGTTTAACACTGCAACGCTAACATGCAcataaacgcacacacacatctactgTATACACATACTGCAAGAGCAGGAAGGAGCCTGACCCACTGTGTAGCTTGCTTTTTACGCAACACTgcaatatgaaaaaaaagtacataatTATTTTGTTCACGGTATCCCATAAAGACTTGCGTCTTTCTTGATCTACATTAGAAAAGGACTACTATAAAGCATGCCAAATGTTTCTTATTTACAACCCAATGAGATCTTGTATTATACACATCTTACTTATTCCAcaacgctgtggagataggtctggcaatgcgagactatacaCACCTTGACTTTTTTGCTTACACTTTCTCTTCATTCTGTCTTATGTGGTGCATACAACGAATCCTCAGCCAAATATCTGCATCAGTGCCTGCTCGACCGGATCAACCATACACAAGCTGTGTAGTGTAGTCATGGCTCATATATCTCTGTCTGCTCCATGTTCTCAACAGTCTGGACATATCAACAAACTATATAACAAGATGTCTGCAGCTGCATAGGGTAGAAGTGAAATTATTAAACTAATATTTCCCGAATGTCTTTTCATCTTCTTGTGATATCAGTATAATAACGTTACTGTTAAGTACAAGCTGCATAATGTGCAATTGAGATGTGCTGGCGAAAGGTGAAAGAGCTGTAATTTCACCTTTCTTTTGTTGGCTTGCAAAAACAGAAGCGGCGCACATGTGTAAATGCAGCGTGAAAGCATGGTGAACCAGacgtacatttgtgtgtgtgtgtgcgtgtgcgtgtgcgtgtgcgtgtgtgtgtgcgtgtgtgtgtgtgagagagagggagagagaaaatgtgtgtgtttcagagagaGACAATGAAGGCCATTGAGAGAATTAAGTTCTGGCTTAAACAATATCCGTTGAAGTTATTTGTGATACAAGggcatttttgaaaacactgcTGTAATAGGATTTTGTGACAATATTACCTGTACTTTATAAAGGCTGTGCATTTGTaatgaattcttttttttaatttattgtttaATAGGGAACACAAAATAACCTCAAATATTGACAGTAATCACTGCACCACCAACATGACGGTAATTATAATCAATTAATAACCTGCTTTTCAAATTAATATCACGTGTCCTTGAAGTTAACGTATGATTCAATACAATAAAGCAATGcatttttggtttgg

Function

symbol description
ccdc92 Orthologous to human CCDC92 (coiled-coil domain containing 92).

NR:

description
coiled-coil domain-containing protein 92-like

GO: NA

KEGG:

id description
K16452 CCDC92; coiled-coil domain-containing protein 92

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804564.1 True 2455 mRNA 0.48 5 2037572 2054481
XM_039804565.1 False 2237 mRNA 0.47 4 2040539 2054481

Neighbor

gene id symbol gene type direction distance location
ncor2 ncor2 coding upstream 88857 1804636 ~ 1948715 (+)
ep400 ep400 coding upstream 265899 1736678 ~ 1771673 (+)
ulk1a NA coding upstream 301957 1721805 ~ 1735615 (+)
adgrd1 adgrd1 coding upstream 316679 1680081 ~ 1720893 (+)
LOC120560673 LOC107389948 coding upstream 370040 1664984 ~ 1667532 (+)
kctd9a kctd9 coding downstream 85616 2140097 ~ 2156589 (+)
LOC120560792 gnrh1 coding downstream 103131 2157612 ~ 2160627 (+)
klhl22 klhl22 coding downstream 138431 2192912 ~ 2203066 (+)
LOC120560154 nefl,LOC102797482,LOC104959585 coding downstream 208428 2262909 ~ 2266743 (+)
LOC120561412 lrrtm4,LOC104959581,LOC103353625,LOC101488074,LOC100703069,LOC102799547 coding downstream 311269 2365750 ~ 2434942 (+)
G58372 NA non-coding upstream 86300 1933007 ~ 1951272 (+)
G58347 NA non-coding upstream 309239 1701907 ~ 1728333 (+)
G58286 NA non-coding upstream 475052 1476674 ~ 1562520 (+)
G58269 NA non-coding upstream 680323 1356850 ~ 1357249 (+)
G58260 NA non-coding upstream 703689 1333501 ~ 1333883 (+)
G58383 NA non-coding downstream 7593 2062074 ~ 2062569 (+)
G58384 NA non-coding downstream 8139 2062620 ~ 2063002 (+)
G58390 lgi3 non-coding downstream 13104 2067585 ~ 2071483 (+)
G58382 NA non-coding downstream 20339 2074820 ~ 2089793 (+)
G58478 NA non-coding downstream 77467 2131948 ~ 2132274 (+)
lmx1bb lmx1b,LOC102213269,LOC100696266 other upstream 1199711 789405 ~ 837861 (+)
LOC120560799 NA other upstream 1825189 210742 ~ 212383 (+)
dock5 dock5 other downstream 219197 2273678 ~ 2312665 (+)
lman2lb NA other downstream 823893 2878374 ~ 2883861 (+)
LOC120560521 tjp2 other downstream 1380684 3435165 ~ 3522756 (+)
G59086 NA other downstream 2062798 4117279 ~ 4117631 (+)
G59172 sub1 other downstream 2369660 4424141 ~ 4429981 (+)

Expression


Co-expression Network