lhx2b (lhx2)


Basic Information

Item Value
gene id lhx2b
gene name lhx2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 13349141 ~ 13366210 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804575.1
CACAAGGCAGACAGCTCCAACACCTCCGAAGACAGAAACTCTCTTCTTGCCCCCGTctcatcttctctctctctttgaaaATCGGACCTTCCAAACTGCAGCCccggacacacagacagacagagaaaggttGGCCGGTGGTCCGTGCGTAACGGAGGCAGAGGCGCCGCTGCTTTCTCCCCCCAGACCGCTCGGTTTAATAAAAAGTACAGCCAAAGCAGTTCGGTGGCGGCGGAACAGCCAATGAACATAAATGGTGCGTCGTGACGCAACAGGGCCCCGTTGATAAGGAGCGGAGAGTCCAACCGGGACCTGAGAAGGAGGCACGGCGGTTTTTGGGGGGCCAGCAAACACTCGCCTATCATCAGTCAACGTAAAAAAAAGCCAACTCCTCCTCTTCTGCTGTTACGCACATGTATGCAGCCTTCTTGGCAAAAGACAAAACATTAACCAAACCGACTACTGTAAAGGAAAAACGGCTTCTCCCAGAACCGCCAGCGGGATTCTATAAAGCAAAAGGtgttttctatttctctctctctctctctctctcgctctctctctctctatatctgcAAAAGCAAAAGTAGTTTGAGCGACACAAATCTGCTGCTGCAAGCATCAACTTGGACTGTTGAACCtggaggaaggggaggaagcCTTTCTCACAGGCTCCCTGTCagctttttttggacatatctttttttcttttctttttttttcttctttctgacTGTGTGATGCGTTagaaggctgctgctgctgcccggCTTTTGGCAGTGCCAGTTATACACAGTTAGGCCTACTTATTGTtttgcagaaagaaagaaagaaaaaaaggggagaATTTGGCCAATGACTTGCAGACTGTCGAAATCCTGAAACATTTTTACTCCAGGCGAGGAGGAGGCATCGGTGCTGAGAGACCCATGCAGCGGGGCTTCCATAGTTGGTATGTTTATTCATCGTGAATGGAAAAGAAAGTACAGAAAGAGAAATTTGGGGTAAGACAGAAATAACATCCTACCCGAGACTGAGAGACACACTCGATTTccagaaaaagagaagagaaatcGCCGCGGTTATTTATGAATTAATCATAGCTTATTAATAATGAGAGCTGCAGAGATTCGGATGACGGTTTCCATTGGCAGATGAGACGTAGTGTGGAGAACACGTGTCCAATTTTCCCCTCATATTTTTTCCTCCCCTGATCTGGATTTTTCACTTGTCAcggcaagaaagaaaaaagattttttttaaattaaaaaagcgAGTGTTTTGAGTGGCGTTATTGCGCAGGGTTTTGCCTCTCATGGACATCTTGGCTTGCAGATCCGAAGAGAACAGTTATAATATCCTCCCCTCTGCGGCAACGATGCTATTCCATGGCCTCCCTGGAGGCGACGTGCACGGTGTGGTGGAAGAAATGGACCGGAGAGGAAAGAGCGAGTCAGCAGCCATCAGCTCGGCCATCGATATGGGGGAATCAGAGACGTCCATGCCGTGTATGGCGAGCGAGCGCGTGGCTCTGTGCGCCGGCTGCGGCCGGAAGATCGCGGACCGCTACTACCTGCTGGCCGTGGACAAACAGTGGCACATGCGCTGCCTCAAGTGCTGCGAGTGCAAACTCAACCTGGAGTCGGAGCTCACCTGCTTCAGCAAGGACGGCAGCATCTACTGCAAGGAGGACTACTACAGAAGATTTTCGGTGCAGAGATGCGCTCGGTGCCACCTGGGGATCTCCGCGTCGGAGATGGTGATGCGGGCCCGGGACCTGGTCTACCACCTCAACTGCTTCACGTGCACGAGCTGCAGCAAGATGCTCACCACCGGGGACCACTTTGGCATGAAGGACAGTCTGGTGTACTGCCGGCTGCACTTTGAGACTCTCATCCAAGGAGAATATCAGACACATTTTAACCACGCGGACGTTGTCCCGCACAAAGGCCTGGGCCCGGCCAACACGCTCGGACTATCCTACTTCAACGGCGTGGGCACAGTGCAGAAAGGCCGGCCCAGGAAGAGGAAAAGCCCCGGGCCGGGGGCCGAGCTGGCAGCTTATAACGCAGCACTGAGCTGTAACGAGAACGACGGCGAGTCCATGGACCGGGACTCCCAGTACAGCTCCAGTCAGAAGACCAAGCGCATGCGCACGTCCTTCAAGCACCACCAGCTGAGGACCATGAAGTCCTACTTCGCCATCAACCACAACCCGGACGCCAAGGACCTCAAACAACTCGCCCAGAAGACGGGCCTCACCAAGCGGGTCTTACAGGTCTGGTTCCAAAACGCTCGGGCCAAGTTCAGGAGGAACCTGCTGCGGCAAGAGAGTACCGGGGTGGACAAGGCATCCGACGGCTCCACGCTGCAGGGCGGCACGCCATCAGGCCCAGCCTCAGAGATCTCCAATGCTTCCATGAGCCCCTCCAGCACCCCCACCACCCTGACAGACTTGACCAACCCCACCATGCCCACTGTCACCTCCGTGCTCTCCTCAGTGCCGGGTGGCATGGACGTCCACGAGTGCCGGAGTCCGTCACAGACCACACTGACCAGCCTCTTCTGATAGGACGGAGCCCTTCACCTCAGCCTCACCCCCTACCACCCTATCCCTTCTCTGCTCCACGCTACTGGATCTAAAACTGAGCACTGTTGACTCCTTCCAACATTAAATGGATTAGAAAAGAGAAGGTAACGGAAGCATTCAAAAAAAGAGACTTTATTTCGCTCTGAGCCCATTAGAGACTATTTGCATAGTGAGGCGGCCAAGCCTTCCAGATGGAACAGTTGTTGTTATTTTGATGTTGTTGTCTTGTCGAGAACTGAGGAGACTTGATTTGCATTTTCCAATGtttacagagagagaaaaaagaaaactgcttaatttttaattaattcgttttttttcttcatttttttcccccagcacAGTATTTATGTTGTTGTACAAGAGTCACTGTTAGAAGGATTGTAAAAAATTCTCCTTTTTGAAAATCTGAGATTAAACACAGGTTACAATATC
>XM_039804576.1
GCACAAGGCAGACAGCTCCAACACCTCCGAAGACAGAAACTCTCTTCTTGCCCCCGTctcatcttctctctctctttgaaaATCGGACCTTCCAAACTGCAGCCccggacacacagacagacagagaaaggttGGCCGGTGGTCCGTGCGTAACGGAGGCAGAGGCGCCGCTGCTTTCTCCCCCCAGACCGCTCGGTTTAATAAAAAGTACAGCCAAAGCAGTTCGGTGGCGGCGGAACAGCCAATGAACATAAATGGTGCGTCGTGACGCAACAGGGCCCCGTTGATAAGGAGCGGAGAGTCCAACCGGGACCTGAGAAGGAGGCACGGCGGTTTTTGGGGGGCCAGCAAACACTCGCCTATCATCAGTCAACGTAAAAAAAAGCCAACTCCTCCTCTTCTGCTGTTACGCACATGTATGCAGCCTTCTTGGCAAAAGACAAAACATTAACCAAACCGACTACTGTAAAGGAAAAACGGCTTCTCCCAGAACCGCCAGCGGGATTCTATAAAGCAAAAGGtgttttctatttctctctctctctctctctctcgctctctctctctctatatctgcAAAAGCAAAAGTAGTTTGAGCGACACAAATCTGCTGCTGCAAGCATCAACTTGGACTGTTGAACCtggaggaaggggaggaagcCTTTCTCACAGGCTCCCTGTCagctttttttggacatatctttttttcttttctttttttttcttctttctgacTGTGTGATGCGTTagaaggctgctgctgctgcccggCTTTTGGCAGTGCCAGTTATACACAGTTAGGCCTACTTATTGTtttgcagaaagaaagaaagaaaaaaaggggagaATTTGGCCAATGACTTGCAGACTGTCGAAATCCTGAAACATTTTTACTCCAGGCGAGGAGGAGGCATCGGTGCTGAGAGACCCATGCAGCGGGGCTTCCATAGTTGGTATGTTTATTCATCGTGAATGGAAAAGAAAGTACAGAAAGAGAAATTTGGGGTAAGACAGAAATAACATCCTACCCGAGACTGAGAGACACACTCGATTTccagaaaaagagaagagaaatcGCCGCGGTTATTTATGAATTAATCATAGCTTATTAATAATGAGAGCTGCAGAGATTCGGATGACGGTTTCCATTGGCAGATGAGACGTAGTGTGGAGAACACGTGTCCAATTTTCCCCTCATATTTTTTCCTCCCCTGATCTGGATTTTTCACTTGTCAcggcaagaaagaaaaaagattttttttaaattaaaaaagcgAGTGTTTTGAGTGGCGTTATTGCGCAGGGTTTTGCCTCTCATGGACATCTTGGCTTGCAGATCCGAAGAGAACAGTTATAATATCCTCCCCTCTGCGGCAACGATGCTATTCCATGGCCTCCCTGGAGGCGACGTGCACGGTGTGGTGGAAGAAATGGACCGGAGAGGAAAGAGCGAGTCAGCAGCCATCAGCTCGGCCATCGATATGGGGGAATCAGAGACGTCCATGCCGTGTATGGCGAGCGAGCGCGTGGCTCTGTGCGCCGGCTGCGGCCGGAAGATCGCGGACCGCTACTACCTGCTGGCCGTGGACAAACAGTGGCACATGCGCTGCCTCAAGTGCTGCGAGTGCAAACTCAACCTGGAGTCGGAGCTCACCTGCTTCAGCAAGGACGGCAGCATCTACTGCAAGGAGGACTACTACAGATTTTCGGTGCAGAGATGCGCTCGGTGCCACCTGGGGATCTCCGCGTCGGAGATGGTGATGCGGGCCCGGGACCTGGTCTACCACCTCAACTGCTTCACGTGCACGAGCTGCAGCAAGATGCTCACCACCGGGGACCACTTTGGCATGAAGGACAGTCTGGTGTACTGCCGGCTGCACTTTGAGACTCTCATCCAAGGAGAATATCAGACACATTTTAACCACGCGGACGTTGTCCCGCACAAAGGCCTGGGCCCGGCCAACACGCTCGGACTATCCTACTTCAACGGCGTGGGCACAGTGCAGAAAGGCCGGCCCAGGAAGAGGAAAAGCCCCGGGCCGGGGGCCGAGCTGGCAGCTTATAACGCAGCACTGAGCTGTAACGAGAACGACGGCGAGTCCATGGACCGGGACTCCCAGTACAGCTCCAGTCAGAAGACCAAGCGCATGCGCACGTCCTTCAAGCACCACCAGCTGAGGACCATGAAGTCCTACTTCGCCATCAACCACAACCCGGACGCCAAGGACCTCAAACAACTCGCCCAGAAGACGGGCCTCACCAAGCGGGTCTTACAGGTCTGGTTCCAAAACGCTCGGGCCAAGTTCAGGAGGAACCTGCTGCGGCAAGAGAGTACCGGGGTGGACAAGGCATCCGACGGCTCCACGCTGCAGGGCGGCACGCCATCAGGCCCAGCCTCAGAGATCTCCAATGCTTCCATGAGCCCCTCCAGCACCCCCACCACCCTGACAGACTTGACCAACCCCACCATGCCCACTGTCACCTCCGTGCTCTCCTCAGTGCCGGGTGGCATGGACGTCCACGAGTGCCGGAGTCCGTCACAGACCACACTGACCAGCCTCTTCTGATAGGACGGAGCCCTTCACCTCAGCCTCACCCCCTACCACCCTATCCCTTCTCTGCTCCACGCTACTGGATCTAAAACTGAGCACTGTTGACTCCTTCCAACATTAAATGGATTAGAAAAGAGAAGGTAACGGAAGCATTCAAAAAAAGAGACTTTATTTCGCTCTGAGCCCATTAGAGACTATTTGCATAGTGAGGCGGCCAAGCCTTCCAGATGGAACAGTTGTTGTTATTTTGATGTTGTTGTCTTGTCGAGAACTGAGGAGACTTGATTTGCATTTTCCAATGtttacagagagagaaaaaagaaaactgcttaatttttaattaattcgttttttttcttcatttttttcccccagcacAGTATTTATGTTGTTGTACAAGAGTCACTGTTAGAAGGATTGTAAAAAATTCTCCTTTTTGAAAATCTGAGATTAAACACAGGTTACAATATC

Function

symbol description
lhx2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in neuron differentiation; positive regulation of transcription, DNA-templated; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including hair follicle development; maintenance of epithelial cell apical/basal polarity; and nervous system development. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
PREDICTED: LIM/homeobox protein Lhx2

GO: NA

KEGG:

id description
K09373 LHX2_9; LIM homeobox protein 2/9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804575.1 True 3025 mRNA 0.51 5 13349142 13366210
XM_039804576.1 False 3023 mRNA 0.51 5 13349141 13366210

Neighbor

gene id symbol gene type direction distance location
bcl2l16 LOC103353844,LOC104923787,LOC108246437,LOC104963815 coding upstream 416142 12909814 ~ 12932999 (+)
si:dkey-90l8.3 LOC104923788,LOC103353846 coding upstream 483889 12860590 ~ 12865252 (+)
ccn1l2 LOC104943830 coding upstream 511234 12831272 ~ 12837907 (+)
fkbp15b NA coding upstream 554710 12752510 ~ 12794431 (+)
fgf17 fgf17,LOC100689794 coding upstream 600605 12740866 ~ 12748536 (+)
adgrd2 NA coding downstream 201349 13567559 ~ 13646350 (+)
LOC120561313 olfml2a coding downstream 503472 13869682 ~ 13902649 (+)
LOC120559997 NA coding downstream 578828 13945038 ~ 13961157 (+)
atad1a atad1,LOC101479261,LOC100705680,LOC104934768,LOC102292399,LOC106527948 coding downstream 620021 13986231 ~ 14000271 (+)
piwil2 piwil2 coding downstream 781360 14147570 ~ 14188917 (+)
G61194 NA non-coding upstream 164691 13182619 ~ 13184450 (+)
G61192 NA non-coding upstream 166833 13181582 ~ 13182308 (+)
G61160 NA non-coding upstream 349254 12999459 ~ 12999887 (+)
G61091 NA non-coding upstream 667073 12679709 ~ 12682068 (+)
G61067 NA non-coding upstream 710281 12638608 ~ 12638860 (+)
G61232 NA non-coding downstream 58541 13424751 ~ 13424951 (+)
G61244 nr5a1,LOC101062876 non-coding downstream 281087 13647297 ~ 13651464 (+)
G61254 NA non-coding downstream 313057 13679267 ~ 13679593 (+)
G61255 nr5a1,LOC102788368 non-coding downstream 314003 13680213 ~ 13680865 (+)
G61258 NA non-coding downstream 317786 13683996 ~ 13684206 (+)
LOC120560904 crb2,LOC103353841,LOC106959700,LOC106929552 other upstream 168650 13132098 ~ 13180491 (+)
G61139 tubb2b,tubb4b,LOC103024866,LOC101061694,LOC105901187 other upstream 425305 12921147 ~ 12923836 (+)
G60897 NA other upstream 1422540 11926183 ~ 11926601 (+)
LOC120561144 NA other upstream 2596701 10748116 ~ 10752440 (+)
LOC120561142 NA other upstream 2602188 10726438 ~ 10746953 (+)
G61337 LOC100705941,LOC102292089,LOC108234925,LOC106529513,LOC104934772,LOC103365846 other downstream 741273 14107483 ~ 14109546 (+)
G61338 htr7,LOC104934772,LOC101065316 other downstream 775232 14141442 ~ 14142050 (+)
LOC120560400 tmem150a,LOC106585116 other downstream 886046 14252256 ~ 14281771 (+)
G61383 NA other downstream 917207 14283417 ~ 14283871 (+)
G61390 crybb2,LOC108234953,LOC100703162 other downstream 951329 14317539 ~ 14319506 (+)

Expression


Co-expression Network