mrps27 (mrps27,LOC106943511)


Basic Information

Item Value
gene id mrps27
gene name mrps27,LOC106943511
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 24935660 ~ 24948527 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804591.1
TAAGAAATGGTATCGTCCAAAGATGGCAGCCTCCGTGTGGAAGCGATGTGTGACTGCAGCTGTCAAAGTTAAATGTTTATCTCCGTCTTTTTCAGCCAGAAGATGGTTGCTCTCAGCAGCTTACACAGATACCAAAGTGTGGGAGGCGAGAGAGAAAGATCCTCAGAACCTGGCTGTACTGGCTACCACTATGGACAGGACATACGACCGGAATCTCCCAGTTAGCTCTCTGACTGTGTCACGGTTTGTTGACAACATTTCATCTCGAGAGGAGGTTGATCAAGCAGAGTACTACCTTTACAAGTTTCGTCACAGTCCAAACTGTTGGTACTTGAGAGACTGGACCATTCACAGCTGGATCAGGCAGTGTCTAAAATACGGCGCCAGAGAGAAGGCCCTGCACACACTTAAAAACAAGgtccAGTATGGAATATTCCCAGATGACTTCACCTTCAACCTTTTCATAGATTCTTACATTAAGGATGGAGACTTTAAAAGCGCATGCTCTGTGGTTGAGGAGGTGATGCTTCAGGAGGCCTTCGACCTTCCCACCACACAGATCTTGTCTCTGTATGCCCTGGGCAGTTTCCTAGCAACCAGACCACAACTCTCTGTGTCAGAGGAGCGGGCGTTGGGAGCATCACTGCTCATCTGTGGACTGAAGCAAGACAACACCGTTGGCCTGAGCGCTCAGCTACTTGGCAATGCTCTGCTAGGCAAGGTGGAGATGTTAAAGGGCATACATGCCGTGTTCAAAGGGATGCCTCTCTTCTGGTCCCATGGATATCTGGGCCGAGCGCTGGCTGTCATGGAGAGAGTGGCTGCTGCTTCAGGCGACGTCAAGCTGTCTAAAGACACACTGGACTACATAAATGGCTTGCTGCAGGAACTGTCTTCTACCTCAGACAGCGACTCCTCTGGAGAGGAGTCCGCAGGTgaggaggaaaagaaggaaGACATCGTAGATGAAGATGATCAGGCCGAGCAGGCTAAGCTACCTCAATATGTCAGCAGATTCAAGGAACTGAGCAGCCAGCTGGAGTCTCAGGATAAACTGGACCCTGCCTCCTTCCAGGCTTTAGtgaccactctggcccagcagAACTTGGCCGCTGCAGAGAAACCTGACTTGGAGCAGTACAAGAGCCGGGTGCAGGCCTGGGAGTCCGAGAACAGGCAGCTGatccagagagagaaagagatgaggGAGAAGGCCGAGCAAGAGAAACAGGAGCGGTTAGCTGCCAGGGCTGCAGCCCAGCAGGTGTAGAGACTCTGAAGATGGAGCTGAATCAGTGATCACTGAACTGTATTTTGCATATGCACATTGGAATTGTGTAATAGGAGTTTTATGTCTCTAAAATTGTGAAATATCAACATTGACCACATTACATCTGCTTGTGCCACTGCTTAGTTTTGTTTACTCGTATTGTGTACTTATGTCATAAGTATTGCTCTGCAAATATAATAATTATGTCAGAAA

Function

symbol description
mrps27 Predicted to be active in mitochondrion. Is expressed in several structures, including head; immature eye; neural plate; pectoral fin bud; and segmental plate. Orthologous to human MRPS27 (mitochondrial ribosomal protein S27).

NR:

description
28S ribosomal protein S27, mitochondrial-like

GO: NA

KEGG:

id description
K17406 MRPS27; small subunit ribosomal protein S27

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804591.1 True 1483 mRNA 0.49 11 24935660 24948527

Neighbor

gene id symbol gene type direction distance location
znf366 znf366 coding upstream 3066 24924529 ~ 24932594 (+)
smyd1b smyd1,LOC107394125,LOC100708974 coding upstream 34561 24895062 ~ 24901099 (+)
znf367 znf367,LOC102779640 coding upstream 86305 24843706 ~ 24849355 (+)
gadd45ga gadd45g coding upstream 720571 24213241 ~ 24215089 (+)
creb3l3l LOC103366202,LOC104958765 coding upstream 725218 24203522 ~ 24210442 (+)
ptger4a LOC103360740,LOC104967800 coding downstream 9635 24958162 ~ 24962478 (+)
loxhd1b LOC108233688,LOC105931393,LOC106513687,LOC106924721 coding downstream 25809 24974336 ~ 25000464 (+)
LOC120560335 LOC104920830,LOC101074081,LOC103362722,LOC101475228,LOC102784348,LOC101160076 coding downstream 70542 25019069 ~ 25023688 (+)
ostf1 ostf1 coding downstream 131780 25080307 ~ 25088646 (+)
atxn2 atxn2 coding downstream 159430 25107957 ~ 25139788 (+)
G64287 NA non-coding upstream 43143 24876562 ~ 24892517 (+)
G64279 NA non-coding upstream 72930 24860249 ~ 24862730 (+)
LOC120560123 NA non-coding upstream 416787 24514819 ~ 24518873 (+)
G64251 NA non-coding upstream 572751 24362475 ~ 24362909 (+)
G64235 NA non-coding upstream 701172 24234274 ~ 24234488 (+)
LOC120560056 NA non-coding downstream 86182 25034709 ~ 25040898 (+)
G64392 NA non-coding downstream 261397 25209924 ~ 25210170 (+)
G64450 NA non-coding downstream 311189 25259716 ~ 25302920 (+)
G64489 NA non-coding downstream 557637 25506164 ~ 25506568 (+)
LOC120560635 NA non-coding downstream 599496 25548023 ~ 25552264 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other upstream 98212 24823718 ~ 24837448 (+)
prxl2c aaed1 other upstream 112594 24821314 ~ 24823066 (+)
G64108 NA other upstream 1242369 23692662 ~ 23693291 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other upstream 1373375 23487967 ~ 23562285 (+)
G63905 NA other upstream 2005455 22929899 ~ 22930205 (+)
LOC120561182 LOC104948667,LOC104930137,LOC103397628,LOC103366370,LOC107092578,LOC102226292,LOC106956829,LOC106919698,LOC103470079,LOC103141747 other downstream 736437 25684964 ~ 25696576 (+)
LOC120560031 LOC104941040,LOC103357154,LOC102795853 other downstream 965752 25914279 ~ 25915577 (+)
LOC120560359 NA other downstream 977560 25926087 ~ 25928596 (+)
nsd3 whsc1l1 other downstream 1410593 26359120 ~ 26383843 (+)
G64814 cldn5,LOC103357131 other downstream 1464342 26412869 ~ 26414597 (+)

Expression


Co-expression Network