XLOC_005158 (si:dkey-187i8.2)


Basic Information

Item Value
gene id XLOC_005158
gene name si:dkey-187i8.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 7149448 ~ 7157527 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009970
GATACAGTCCACTTAAAGTATCAAcctcaaataaacacacactgaacaccaGCAGGTtgaatatgtcttgttttggcaATGCAAACTCTCTTGAAAAGCATGAAATGGACCGAGAAGATGTAGAGATGAATATCTATTCTAATTCAGATCTTATAAACATTCTGGATGTCAGCAGAGAAACCGAGAACACCAAGAAACAGCAAACCCTTCAACATTCAGGAAGTGATTATGTGTGGATCAGAAACTACAGAGTAGCTACAGTGTGTTTGGTGCTGATGTGTGTTTTTCTACTGACTGCAGTCTTAGTGCTGTACTCCCACATCAATACAAACAGCACAAACGAGACCAAAGAGAGGCAAGAGCTGCTAGCCAACCTTACTATTGAGAGGGACCAGCTAGAGTCCAAGAGCATTCGAATTACAAAAGAGAGAGAAGAACTACTAGCCAACGTTACCAAGGTCACTAAAGAAAGGGATCAGCTACTGTTTGAGAGCATTCGATTGACAAAAGAACGGGAAGAGCTACTAGCAAACATCACAGAGGTCACTAAAGAAAGGGACCGGCTACTGTCAGAAAGCATTCGATTGACAAACAGGAGAGAAGAGATACTAGCCAACATCACAAATCTTACTAAAGAAAGGGATCGGATACTGTCTGAGAGCAATCAGTTGACTGAACAGAGGGAAGAGATACTAGCTAACATCACTAACCTTACTATAGAAAGAGATCAGGTACTGTCAGAGAGTACTCGATTGGCAAAAGAGAGAGAAGAACTACTAGCCaacattactaacctttctaagAAGAGTGATCGACTACTGTCTGAGAGCGTTCGAGTgacaaaagagaaagaaaagctACTAGCCAATATCACCGACCTTACTAAAGAGAGGGACGAAATTCTGTCAGAGAGCATTCGATTGTCTAAAGAGAGAGAAGAACTACTCGCCAACAAAACCAAGGTCACTAAAGAGAGGGATCGGCTACTGTCCGAGAGTATTCGTTTGACAAGAGAAAGAGAAGAACTACTAGCCAACAGCACCAAGGTCACTAGAGAGAGGGATTGGCTACTGTCCGAGAGTATTCAATCGTCAAAAGAGAGAGAAGAATTACTAGCCAACAACACCAAGGTCACTAAAGAAAGGGATTTGCTACTGTCCGAGAGTACTCGATTgacaagagagagagaagaagtACTAGCCAACAACTCCAATGTCATTAAAGAGAGGGATTGGCTACTATCAGAGAGCATTCGATTGTCAAAAGAGAGAGAAGAACTACTAGACAACAACACCAAAGTAACTAGGGAGAGGGACCAGCTACTATCTGAGAGATTTAGCTTGACAAAAGAGAGAGAAGAACTACTACACAACAACAGCAATGTCATTAAAGAGCGGGATGAGATAGGGTCCAAGAGCATTCAAttgaaaaaagaaacagaagagcTAATAGCCAACAACACCGACCTCACTAAAGAGAGGGACCGGCTTTTTTCTGAAAACATTCGATTGACAAAGGAGAGAGAAGAATTATCCTCAAATATCTCTGACCTGATTGAACAAAGAGATCAGCTAACTAAGGAGAAAACTGAGCTGTCAAACATGGATGGATGGGTTTACTTTCAGTCCAGTCTTTACTTCCTTTCCTCGTTGACAAAGAGCTGGGAGGAGAGCAGAAAAGACTGTATAGCCAGAGGAGCAGATCTGGTGATTATAAACAACGGAAAGGAGCAAGAGATGGTTAACATGATTTGTGGTGATGTTTTGGTTTGGATTGGTCTGACTGATATTGAGGAAGAGGGCACATGGAAATGGGTTGATGGCAGCAAACAGACCTCTGGTTTCAGGTATTGGAGGTCTCGAGAACCTAATGGAAACAGAAAAGAGAACTGTGTACTAACTGATGCACACGGGTGGATTGATCATCGATGTCATGAAGCGAATAAATGGATCTGTGAGAAAACAATGTGA

Function

symbol description
si:dkey-187i8.2 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-181 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000096624

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009970 True 1970 mRNA 0.42 5 7149448 7157527

Neighbor

gene id symbol gene type direction distance location
XLOC_005157 NA coding downstream 6618 7142467 ~ 7142830 (-)
XLOC_005156 NA coding downstream 66075 7070639 ~ 7083373 (-)
XLOC_005155 NA coding downstream 104754 7017519 ~ 7044694 (-)
XLOC_005154 pcdh15b coding downstream 244073 6566233 ~ 6905375 (-)
XLOC_005153 si:ch211-253p2.2 coding downstream 597767 6542789 ~ 6551681 (-)
XLOC_005159 ipmkb coding upstream 36252 7193779 ~ 7235103 (-)
XLOC_005160 ube2d1b coding upstream 80139 7237666 ~ 7253270 (-)
XLOC_005161 zgc:171971 coding upstream 110865 7268392 ~ 7280551 (-)
XLOC_005162 NA coding upstream 146038 7303565 ~ 7322951 (-)
XLOC_005163 NA coding upstream 248561 7406088 ~ 7441307 (-)
XLOC_005151 NA non-coding downstream 656356 6306823 ~ 6493092 (-)
XLOC_005152 NA non-coding downstream 785868 6348703 ~ 6363580 (-)
XLOC_005164 FP102277.1 non-coding upstream 345435 7502962 ~ 7503098 (-)
XLOC_005170 NA non-coding upstream 845982 8003509 ~ 8073263 (-)
XLOC_005171 NA non-coding upstream 882457 8039984 ~ 8046473 (-)

Expression


Co-expression Network