snx18a (snx18)


Basic Information

Item Value
gene id snx18a
gene name snx18
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 27179360 ~ 27193519 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804607.1
tgctgctgcaggcaGAAGCGTCCTACTCGGAGCGGAGGGAGACTGGAGGAGCTCAGATTAGTGTTGTTGTAGCGGAAAATACCGTCGCCGCAGTTTCACAAGCTGCAACCtctggattaaaaaaacaaaaaaaaaaacacctccgTTTCCTTAGGTTTGACCGAGAGCAAGGACCGCGCAGAGAGGGATATAAACGGgatgtttttttctcccactGCGAGAAGTTTGTACGCGGAGTTTGTGTGAAGAGTAGCCTGACGTTAGTTTCGGTGTGGGCTGACTGAGCTAGCCTGGCTGCCCGCTGCGCTTCCCTCCTGCCCCGGCCAGCCAGCCACAAGTTAGCCCGCTGTCTTCTTCCAGCTGTTGGTGAACCATGGCGCTCAAAGCCAGGGCGCTGTATGACTTCAACTCTGAAAACCCCGGGGAGGTGTCTGTGAGGGAGAACGAAGTCCTAACTTTGTACAGCGAACAGGACATTGATGGCTGGTTTGAAGGGACGAATAGCAAAGGGGAGAGGGGACTGTTCCCCGCTTCCTACGTGGAGATCCTGAGGAACGACGTCGCCTCCACGctcaacaacaacagctgcagcaGCACATCTGGGGACACTTACCCGGACTCCCGATACGCCAACATCCCATCCGGAGGTTTTGACGGCTCTTATAAACCTCAGAATAAAGCTGAGAACTTTTCTAAACCGTCTGCGCCTAGTTTCGCCACTTTCTCAGCCCCAACacaaccacagcagcagcacacttACCAGCAGGCCAGCCAAGGGAGCGATGATGACTGGGATGATGACTGGGATGACAGCTCTACTGTTGCAGATGAGCCAGGGAGTGTAGGAGGAAGGTATCATGACTTTGAAGGCAATGGGCCATCCACTTACAGAGTGTCAACAGCCTCAATGTCAAGAGGCAATGCACAGCAAGCAAAGAGCTCTGCCACGGTCAGTAGAAACCTGAACAGGTTTTCAACCTTTGTGAAGTCAGGAGGAGAGGCGTTTGTGCTCGGAGAGGCTTCAGGCTTTGTGAAGGACGGGGATAAGATCTGTGTGGTGTTGGGTCAGTATGGTCCTGAGTGGCAGGAGAACCCGTACCCATTCGCTTGTACAATTGACGACCCCACTAAACAGACCAAGTTCAAGGGCATGAAAAGCTACATCTCCTATAAGCtgacacccacccacacacagaacCAGGTGAACAGGAGGTATAAGCACTTTGACTGGCTGTATGCTCGGCTGGTGGAGAAATTCCCCGTCATCTCAGTGCCACACATCCCGGAGAAGCAGGCCACAGGGCGCTTCGAAGAAGACTTCATCTCCAAGAGGAGGAAAGGCCTCATATGGTGGATGAACCACATGACCAGTCACCCTGTCCTGGCCAGGTGTGATGTCTTCCAGCACTTCCTCACCTGCAACAGTACAGACGAGAAGGCCTGGAAGCAGGGTAAGAGAAAGGCGGAGAAGGACGAGATGGTTGGAGCCAACTTTTTCCTCACTATCAGCCCCCCTGCGGCTCCGCTCGACTTCCAGGAGGTGGAGAGCAAAATTGACGGATTCAAGACTTTCACAAAAAGGATGGACGACAGCGCCTTCCAGCTCAATGCCACAGTCAATGAGTTTGCCCGCAAGCAGATCACTGGCTTTAAGAAGGAGTATCAGAAAGTGGGGCTGTCATTTAGGGTCCTCAGCCAAGCCTTTGAAATGGACCAGCAGGCGTACTCTACTGGACTCAACCAGGCTATCTCCTTCACTGGGGAGGCGTATGAAGCCATTGGAGAGTATTTTGCTGAGCAGCCCCGAAAGGATCTCGACCCGATCATGGATTTGTTAGCTCTATACCAAGGACACCTGGCAAACTACCCAGACATCATCCATGTCCAGAAAGGAGCCCTGACAAAGGTGAAAGAGAGCCAGAAACATGTAGAGGAGGGCAAGATGGACCGGGCGCAGGCGGAAGGCATCGACGAGCGCTGCAACATTATCTCCTGCGCCACGCTGGCTGAGATCCAGCACTTCCACCAGATCCGTGTGCGTGACTTCAAGGCACAGATGCAGCACTACCTACAGCAGCAAATTGCCTTCTTCCAAAAAATCACAGGCAAGCTAGAGGAGACTCTGCAGAAGTATGACAACGCGTAATTGACTGCTTGTCTCAGCCCGTCGGTTTAGTTCTTGGTGATCACTGACTCATGCAACTCCCTCACCCAGCGGAGTGACATACTGGTGAATGCTGTTCAACCAGCAGGGAGAGACATCCAAGGAGATAACGCTCCAGTAACAATGACTTTTCAACCAAATCCAGGTTTCTGTGCGTGTTGGCCACATTTCTGGGGACTGGATGTTCTTGTTTAGAGAGGATGTGTAATTTAATGAAGTTAGGCCAACTTGTAACCCAAACAACAGTCTTTAGATTTAATGAGAATCAATAATAATGATGGTGCACCACTTGGTCCGGTGGGTGGGTGAATGAAATCTAATCAATGTTATGACCAGCAGAGAGAGAACCATGTATCTGCTGCTGCGTTAAACACCCGGCGCAGGACTTCATATATCAAATGTTTTTTAGCCTTACAATACTGTTTTGAACTGACTGTTTATATACGTGACTGCCACTCCAAGAGCAGCGATGCTCCAGTGGCTAAAACACTGCCTTCTGGAAACTCTCAAGCCCTTCCTGCTATCTCTCTTCTTGGACAAACAGGACGAAATGTTTACAGTCTCCTCGCTGAGCAGCCACTGTCCCGCTGTGCCTTCTGGTTACGTCTCTCTGGTCATTTTTGTTAGTGGTTACTCAAAagctttatatactgtatatgcagaaATATATTCTATTTGTTTTTACAAAGCTACACATTTTGTAgtctttgggaaaaaaaaaaaaaaagatcactgTGCTTTGAACGAGGGCAGTGTCTTACATGGAAGATATTGTTCGAttgtgccatttttttttttcccccagtggcCCCAGGGTTGATTTTTAAACACTCACACAGTGTGacaaaatcacacacaaaacTAGGAACTAGGATCTAGAGAGGATTACCTGCTTTGACAATAGGAACCTATGCCTTACACAGGGCACAGCCAGCACTGCACAATTTAAGGGACGAGTAGGATGGACACTTGCTTTGCCGGATACCTGAATTTGTGTCAGCATAATGTTGGTTTTCAGGCTTAGTTTTGGGATAGTGTTAGGAGATAGGCTGTTAATGGGTAGAGAGTTCCTCACCTGTTTTAATAATACAGTCTTTTTCATAGCACACACTTCTAGACAGTTCACCTGTACTGCTGTTTTTAACCTTTATGGTGTTGGTTGCATCATGAAGAGATTAATATAGAAGCCGAAACGCGAAATAAATTCCTCCTTCACAGAAA

Function

symbol description
snx18 Enables phosphatidylinositol-4,5-bisphosphate binding activity. Involved in several processes, including cytoskeleton-dependent cytokinesis; endosomal transport; and positive regulation of GTPase activity. Located in cytoplasmic vesicle and extracellular exosome. Is extrinsic component of cytoplasmic side of plasma membrane. Colocalizes with clathrin-coated vesicle.

NR:

description
PREDICTED: sorting nexin-18

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17923 SNX9_18_33; sorting nexin-9/18/33

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804607.1 True 3385 mRNA 0.49 2 27179360 27193519

Neighbor

gene id symbol gene type direction distance location
fsta fst coding upstream 168039 27005139 ~ 27011321 (+)
itga2.2 itga2 coding upstream 176716 26981345 ~ 27002644 (+)
paip1 paip1,LOC104941454 coding upstream 204421 26965484 ~ 26974939 (+)
fgf10b fgf10,LOC104956796 coding upstream 217368 26952220 ~ 26961992 (+)
adamts12 adamts12 coding upstream 233893 26924528 ~ 26945467 (+)
LOC120560992 LOC106926053,LOC103469987,LOC103145901,LOC108233650,LOC105928392,LOC106519893 coding downstream 115681 27309200 ~ 27324830 (+)
mthfd2l mthfd2l,LOC102288655,LOC100709995 coding downstream 200898 27394417 ~ 27417204 (+)
LOC120560091 NA coding downstream 225190 27418709 ~ 27420717 (+)
LOC120559995 NA coding downstream 229018 27422537 ~ 27428690 (+)
areg NA coding downstream 240476 27433995 ~ 27442196 (+)
LOC120560738 NA non-coding upstream 279802 26897902 ~ 26899558 (+)
G64967 ykt6 non-coding upstream 283217 26893701 ~ 26896143 (+)
G64949 btf3,LOC103470010,LOC107089645,LOC106958054,LOC106926613 non-coding upstream 350175 26761391 ~ 26829185 (+)
G64944 NA non-coding upstream 495105 26682518 ~ 26684255 (+)
G64930 NA non-coding upstream 515834 26662767 ~ 26663526 (+)
G65083 NA non-coding downstream 6430 27199949 ~ 27200190 (+)
G65106 NA non-coding downstream 185479 27378998 ~ 27379215 (+)
G65108 NA non-coding downstream 195938 27389457 ~ 27389862 (+)
G65171 NA non-coding downstream 283229 27476748 ~ 27476966 (+)
G65272 NA non-coding downstream 709556 27903075 ~ 27904933 (+)
ndufs4 ndufs4 other upstream 139761 27012210 ~ 27039599 (+)
si:dkey-178e17.1 slc25a1,LOC100697273,LOC101470788,LOC103359526,LOC102784907,LOC107394264,LOC103145904 other upstream 517465 26644661 ~ 26661895 (+)
cltcl1 LOC100691387,LOC103359525 other upstream 535193 26614237 ~ 26644167 (+)
c6h22orf39 clg12h22orf39 other upstream 682373 26494284 ~ 26496987 (+)
G64814 cldn5,LOC103357131 other upstream 764763 26412869 ~ 26414597 (+)
G65084 lipg other downstream 11715 27205234 ~ 27370959 (+)
mboat4 NA other downstream 1652107 28845626 ~ 28849471 (+)
ubac1 ubac1 other downstream 2151061 29344580 ~ 29351756 (+)
fbxo21 fbxo21 other downstream 2993329 30186848 ~ 30212108 (+)
LOC120560820 NA other downstream 3053368 30246887 ~ 30251519 (+)

Expression


Co-expression Network