LOC120561472 (LOC104952314,LOC103366651)


Basic Information

Item Value
gene id LOC120561472
gene name LOC104952314,LOC103366651
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20161997 ~ 20168159 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804632.1
TTTGTGTTGGGCACGTAATTCTGGTGTGTTTTAAGCGGGGAATCGGTGCATCTTTCCTCGATACTTTTGCTTTGAAAAGTCGACACCGTGTCGATTACTGACGTTACTTCTAGCTTCACAGCTTGTTTTTCCAAAAGGCTTTCCGGTTGCACAGGTTTGAAAGCAAGTGAGTCGGTCTGCGTTTCGTTAATTGTTGCTACCTCAGTTTCATACTTTTGTACCAACATCTCACTGAGTGAGGTCTGAAGAATTATAGTTCTCATTGTACAAGTTAAGacgagtttgtgactgttaagaAACcggaagggggaaaaaaaaacactccgaTAAGGAGCGACTGCTTTATTGGTTATGATTTCACCAGCTGACAGGTTGGAGTAGTATATGGAAGAGCTCTACAATGTGGACAGATAAGCAACGAGGAATCAGAGTTTCTCAGGAGGAGCTTCTCTGCAAGAACGCCTGTGGGTATTATGGAAACCCTGCGTGGCAAGGCTTCTGCTCCAAGTGCTGGAGAGAGAAAGCACGAACAGCTGGAGCCTCGAGGCAAGACACAAGGCCGAGCAATGATGGAACTCCTCTCACCTTCTCCAAATTTGAAGTGAAGAAAAGCACTGAGAAAGGTCGTCGAATTAACACAATGAGAAGACTCTTCTGGGGCAGTCCATCACCTCCTAAACGTCAAGAGTCTTCTGAAAGCCATGCAAATGTGTTGAAAGCTTACCAGAGCCTCGAGCCCGGGGACTTCACTGGTTTCCTGAAGATACTGAAGAGCCCTTCCTCCCAGCGCTTGCAGTCTCGATGTACAGCTTTCCTCAACACAATGGAGGCGTACCATGATCTGCCGGTACAGAAGCTGTCTGATCTTGTGCAGGATTTCTACCAGTCTTTTGCTGAATATTTTAGCGgttttccTGAGGCTCAGGTCACTCAAATAATGGAGCATGTAGAGAAATTAATAATGACACGGTTGCACAAATGGGTTTTCTGCCATGACAGCTGTGATGATGAACAGAAGGATCTGGCTCTCCAGAGAAGGATACGATCTTTGAATTGGATCACCCCGCAGATGCTGAGCGTACCTTTTCCGGATAAAAAGACTGCAGTCACAGCCGACCCGTTTCTGCCTGCTATAACAGCCATAATTGAAATGGATGCCAAACGAGCACCTCAGGATAAACTTGCATGTGTGTCCAAATGCAGTCAGCACGTTTTTGAAGCGCTCTCAACCTCAAACAGTGAGCCCGCTAATGCTGATGACTTCCTGTCAGGCCTGGTGTATGTGGTGCTGAAGGCCAATCCACCTCGCCTACACTCCAACATGCAATATGTGATACGTTTTGGTCTCCCTCACAGTCTGATGGCAGGAGAGAGCGGCTACTATTTCACAAATTTGTCTTGTGCAGTGGCCTTCATTGATAAGCTGGATGGACCAGCACTCAACCTCAGTCCAGAGGAGTTTGAGGGCTACATGCTGCGTCAGCGTGCTCCCCGTGAAGGAAAGAGGCAGCAGGTTGCCAGTGACGCACAACATCTGTTAGAGGAGCTAACAGGCAGACAGGAGAAGCTGGACCAAGGGATGGATGCTCTCAACATGCAGCTACAGACGTGGGTCAAAGCTGTTCATTCACAACTGGATGAGGCAACAGCCCAGTTTGCTCTAGTACAAAAGGAGATAACCGCTCAGGCTGAAATCTCACAGGTTTTTTCATCCTCATCTCATGATGCATCACCGCAAGGGGACGAGAAAGACGAGTCAGTGCTGGCCTTTACGGATCAACATGCAGGTCCACAAGCTACAGACTGTTAGCTATATCAAGAAAAACACCTAATCTGGTACTTGTCTCTTTTAAATCATCAGCACTAACTTATGTAGGCTGCAAAACAAAGATTTATATTTCTAATGTTACACTTGCACACGTTCCGATCACAGAAAGCTTGGTAAGCTGTTGAACATGAAGGAAAACTTCTTGAAGGAAACTTTTTTCATTTGGTATAACAGGGCAcacagagttttttttaatgactttgatGAAGATTTGCCCTTGTATCCTGTTTGAGGATGAAGGCCATTAGAAATACATTCCAATTTATGGAAACAGATGTGATTAAAATTTATATTTAAGCACTCAGGGGACACATCACTTGGAGACATCACCTAACACTTCAAGAGTGCTTATTGAATATTCACTATTTTTTACTAACAGTGTATTAATAATGTGCCTTCATGTAGACTGCtgtgaaataaagaaatatgcTACAGGAGAAAATGTTAGATGGTACTTGTAGACAACTACAAATCAGGGGGTGTATTTAGGAGCTGTGGAACTGTTCCCAACAACTGCCTAGAAGGTGAAATAGCTGGTGCAAAAACAATTTGTAACACATTTTGCCTTCTGTGTTAGTGTGCAGAAGGTATGCATGTTTCCaactgttaaaatgtttttgaagaATTTATAGGGTTTTATGTTATGATCAATTATTGTATCCAATATTATATTAAAGTAAACTTGTATGatttca
>XM_039804633.1
CGTTTGTGTTGGGCACGTAATTCTGGTGTGTTTTAAGCGGGGAATCGGTGCATCTTTCCTCGATACTTTTGCTTTGAAAAGTCGACACCGTGTCGATTACTGACGTTACTTCTAGCTTCACAGCTTGTTTTTCCAAAAGGCTTTCCGGTTGCACAGGTTTGAAAGCAAGTTGGAGTAGTATATGGAAGAGCTCTACAATGTGGACAGATAAGCAACGAGGAATCAGAGTTTCTCAGGAGGAGCTTCTCTGCAAGAACGCCTGTGGGTATTATGGAAACCCTGCGTGGCAAGGCTTCTGCTCCAAGTGCTGGAGAGAGAAAGCACGAACAGCTGGAGCCTCGAGGCAAGACACAAGGCCGAGCAATGATGGAACTCCTCTCACCTTCTCCAAATTTGAAGTGAAGAAAAGCACTGAGAAAGGTCGTCGAATTAACACAATGAGAAGACTCTTCTGGGGCAGTCCATCACCTCCTAAACGTCAAGAGTCTTCTGAAAGCCATGCAAATGTGTTGAAAGCTTACCAGAGCCTCGAGCCCGGGGACTTCACTGGTTTCCTGAAGATACTGAAGAGCCCTTCCTCCCAGCGCTTGCAGTCTCGATGTACAGCTTTCCTCAACACAATGGAGGCGTACCATGATCTGCCGGTACAGAAGCTGTCTGATCTTGTGCAGGATTTCTACCAGTCTTTTGCTGAATATTTTAGCGgttttccTGAGGCTCAGGTCACTCAAATAATGGAGCATGTAGAGAAATTAATAATGACACGGTTGCACAAATGGGTTTTCTGCCATGACAGCTGTGATGATGAACAGAAGGATCTGGCTCTCCAGAGAAGGATACGATCTTTGAATTGGATCACCCCGCAGATGCTGAGCGTACCTTTTCCGGATAAAAAGACTGCAGTCACAGCCGACCCGTTTCTGCCTGCTATAACAGCCATAATTGAAATGGATGCCAAACGAGCACCTCAGGATAAACTTGCATGTGTGTCCAAATGCAGTCAGCACGTTTTTGAAGCGCTCTCAACCTCAAACAGTGAGCCCGCTAATGCTGATGACTTCCTGTCAGGCCTGGTGTATGTGGTGCTGAAGGCCAATCCACCTCGCCTACACTCCAACATGCAATATGTGATACGTTTTGGTCTCCCTCACAGTCTGATGGCAGGAGAGAGCGGCTACTATTTCACAAATTTGTCTTGTGCAGTGGCCTTCATTGATAAGCTGGATGGACCAGCACTCAACCTCAGTCCAGAGGAGTTTGAGGGCTACATGCTGCGTCAGCGTGCTCCCCGTGAAGGAAAGAGGCAGCAGGTTGCCAGTGACGCACAACATCTGTTAGAGGAGCTAACAGGCAGACAGGAGAAGCTGGACCAAGGGATGGATGCTCTCAACATGCAGCTACAGACGTGGGTCAAAGCTGTTCATTCACAACTGGATGAGGCAACAGCCCAGTTTGCTCTAGTACAAAAGGAGATAACCGCTCAGGCTGAAATCTCACAGGTTTTTTCATCCTCATCTCATGATGCATCACCGCAAGGGGACGAGAAAGACGAGTCAGTGCTGGCCTTTACGGATCAACATGCAGGTCCACAAGCTACAGACTGTTAGCTATATCAAGAAAAACACCTAATCTGGTACTTGTCTCTTTTAAATCATCAGCACTAACTTATGTAGGCTGCAAAACAAAGATTTATATTTCTAATGTTACACTTGCACACGTTCCGATCACAGAAAGCTTGGTAAGCTGTTGAACATGAAGGAAAACTTCTTGAAGGAAACTTTTTTCATTTGGTATAACAGGGCAcacagagttttttttaatgactttgatGAAGATTTGCCCTTGTATCCTGTTTGAGGATGAAGGCCATTAGAAATACATTCCAATTTATGGAAACAGATGTGATTAAAATTTATATTTAAGCACTCAGGGGACACATCACTTGGAGACATCACCTAACACTTCAAGAGTGCTTATTGAATATTCACTATTTTTTACTAACAGTGTATTAATAATGTGCCTTCATGTAGACTGCtgtgaaataaagaaatatgcTACAGGAGAAAATGTTAGATGGTACTTGTAGACAACTACAAATCAGGGGGTGTATTTAGGAGCTGTGGAACTGTTCCCAACAACTGCCTAGAAGGTGAAATAGCTGGTGCAAAAACAATTTGTAACACATTTTGCCTTCTGTGTTAGTGTGCAGAAGGTATGCATGTTTCCaactgttaaaatgtttttgaagaATTTATAGGGTTTTATGTTATGATCAATTATTGTATCCAATATTATATTAAAGTAAACTTGTATGatttca

Function

NR:

description
PREDICTED: rab5 GDP/GTP exchange factor-like

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K20131 RABGEF1; Rab5 GDP/GTP exchange factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804632.1 True 2523 mRNA 0.44 9 20161999 20168159
XM_039804633.1 False 2320 mRNA 0.44 9 20161997 20168159

Neighbor

gene id symbol gene type direction distance location
clip1a clip1,LOC102789884 coding upstream 52013 20083913 ~ 20109984 (+)
zcchc8 zcchc8 coding upstream 79007 20076882 ~ 20082990 (+)
rsrc2 rsrc2 coding upstream 87733 20067457 ~ 20074264 (+)
LOC120560988 kntc1 coding upstream 127900 20031875 ~ 20034097 (+)
LOC120560984 NA coding upstream 158102 20001950 ~ 20003895 (+)
psmd9 psmd9 coding downstream 561 20168720 ~ 20172092 (+)
LOC120561473 NA coding downstream 13025 20181184 ~ 20191466 (+)
LOC120561477 NA coding downstream 23760 20191919 ~ 20220630 (+)
pcsk5b pcsk5 coding downstream 58161 20226320 ~ 20300395 (+)
LOC120560539 NA coding downstream 144402 20312561 ~ 20327903 (+)
G63204 NA non-coding upstream 134831 20026910 ~ 20027166 (+)
G63203 NA non-coding upstream 135242 20025755 ~ 20026755 (+)
G63202 NA non-coding upstream 136249 20024913 ~ 20025748 (+)
G63192 NA non-coding upstream 143585 20018117 ~ 20018412 (+)
G63190 NA non-coding upstream 145336 20016232 ~ 20016661 (+)
G63385 NA non-coding downstream 224248 20392407 ~ 20392631 (+)
G63377 NA non-coding downstream 273995 20442154 ~ 20442952 (+)
LOC120560275 NA non-coding downstream 390181 20558340 ~ 20564445 (+)
G63451 NA non-coding downstream 397509 20565668 ~ 20566142 (+)
G63457 NA non-coding downstream 467430 20635589 ~ 20637358 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other upstream 398473 19759596 ~ 19763524 (+)
rasl10a rasl10a other upstream 713047 19430401 ~ 19448950 (+)
tmem119a LOC103353570,LOC104946818 other upstream 1080343 19076561 ~ 19081654 (+)
mvk mvk,LOC102798305 other upstream 1419598 18737518 ~ 18742399 (+)
acacb acacb other upstream 1476534 18661157 ~ 18685463 (+)
vps13a vps13a other downstream 232788 20400947 ~ 20442093 (+)
wdr31 wdr31,LOC102796061 other downstream 305492 20473651 ~ 20490586 (+)
G63480 rbm19 other downstream 508258 20676417 ~ 20677916 (+)
LOC120560787 NA other downstream 1420717 21588876 ~ 21599289 (+)
G63905 NA other downstream 2761740 22929899 ~ 22930205 (+)

Expression


Co-expression Network