LOC120560009


Basic Information

Item Value
gene id LOC120560009
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8428953 ~ 8431230 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639402.1
AGTTAGGGATAGTCATAATTTAATTGTAGATATCTATTATCAAGTTATAGATATCTTGAAATTAATTTTGATTAGAGATATGTGAAATTTGAGATATCTGTAACTTTCATTCTGCCTAgtcaaaatgtaattacagataTCTTGAATTTGAGTTTTGACTAGGCGAAATGACGTTGCAGAtatctgtatgtgtatgcaaATTAGGCCCGCATCCCACTTTAGGCGGAGCACCTGTTAACTGTTAACTTGTAATTAGCACTGATTAGCACCATGTCGGAGCAGCCAGAGGCCGAAGGAGTTTTTAATCGTCTTTTTAATGCTGCAGCCCGTGCAAGACAGGAGCTGGCAGCGAGAAATAATGATTCAACGTTACTTTCCACAACAAGACGACTATTTCGCCGGCAAGTTCATCGAGTTCGGGGAGGATCTGGTGGACGGAGGGAAAGCCCTATTTGGCAAGCAAAACTTTTCCTCCTTCCAGGGCCAGATAATGGTTTTTTACCTCCTACAAAAGAACTTGAGGAACTGGCTAAACTTGGATTAAGTAAATGAAAACCTGTGCATGAGTCAACAGAGGCCGGACGCACAAACTCAAAGATTGGGTTAAACTGGAGTTTATCTGAATTGAACAACTTTGTTTGCCAAAGCTACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639402.1 True 653 lncRNA 0.40 3 8428953 8431230

Neighbor

gene id symbol gene type direction distance location
LOC120560868 NA coding upstream 26384 8331385 ~ 8402569 (+)
LOC120560867 NA coding upstream 39835 8387822 ~ 8389118 (+)
bicdl1 bicdl1 coding upstream 224767 8172560 ~ 8204186 (+)
LOC120560501 mtmr3,LOC103152423 coding upstream 345579 8078302 ~ 8083374 (+)
mtmr3 mtmr3 coding upstream 350785 8055365 ~ 8078168 (+)
LOC120560486 LOC107690107 coding downstream 33941 8465171 ~ 8482178 (+)
zgc:110329 LOC103366798,LOC104939353,LOC104956029 coding downstream 379324 8810554 ~ 8836973 (+)
slc4a5a slc4a5,LOC100703988,LOC101470466,LOC102293566,LOC102195261 coding downstream 430740 8861970 ~ 8907724 (+)
zgc:113436 LOC102776507 coding downstream 491053 8922283 ~ 8933253 (+)
LOC120560802 abcb9,LOC106965289 coding downstream 508599 8939829 ~ 8965106 (+)
G60147 NA non-coding upstream 11103 8417642 ~ 8417850 (+)
G60120 NA non-coding upstream 56402 8372266 ~ 8372551 (+)
G60109 NA non-coding upstream 102000 8325053 ~ 8326953 (+)
G60080 NA non-coding upstream 115840 8302258 ~ 8313113 (+)
G60084 gcn1 non-coding upstream 190165 8232004 ~ 8238788 (+)
LOC120560008 NA non-coding downstream 3511 8434741 ~ 8437598 (+)
trnaw-cca_2 NA non-coding downstream 13224 8444454 ~ 8444525 (+)
trnaw-cca_3 NA non-coding downstream 14388 8445618 ~ 8445689 (+)
trnaw-cca_4 NA non-coding downstream 15550 8446780 ~ 8446851 (+)
trnaw-cca_5 NA non-coding downstream 16715 8447945 ~ 8448016 (+)
LOC120560006 NA other upstream 1208 8423189 ~ 8427745 (+)
cux2b cux2,LOC102795992 other upstream 377613 7947252 ~ 8051340 (+)
atp2a2a atp2a2,LOC102794349,LOC101476777,LOC102310403 other upstream 550582 7847671 ~ 7878371 (+)
zbtb26 LOC104940087,LOC100710858,LOC102306976,LOC102206222,LOC101473380,LOC102792103 other upstream 798773 7625736 ~ 7630180 (+)
susd1 susd1 other upstream 805238 7600092 ~ 7623715 (+)
LOC120560007 NA other downstream 307 8431537 ~ 8434672 (+)
vps37ba vps37b,vps37c,LOC102776795 other downstream 560211 8991441 ~ 9014903 (+)
ppp3cca LOC104934810,LOC100705072,LOC105915415,LOC101486266,LOC102777092,LOC103366803,LOC102200614,LOC101072650,LOC106932221 other downstream 586661 9017891 ~ 9055765 (+)
LOC120560959 golga7,LOC104937560,LOC106585131 other downstream 1495720 9926950 ~ 9981054 (+)
LOC120561142 NA other downstream 2295208 10726438 ~ 10746953 (+)

Expression


Co-expression Network