LOC120560041


Basic Information

Item Value
gene id LOC120560041
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 33876175 ~ 33877007 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639406.1
ATTCTGCATCAgacaacttttaaaaacagctaatgttagctagcgttagctaacgttagctagcgttagctaacattcgttagcgttagctagcagtaacAGTCTTAGAACATGGTACAGATGAAGTTGGAAATGTTTTGGCAAGGAAATTATTGGATATGACTGAATTTCCATTTGTAGTTGCATTATAGCTTTTGGGTTTTGCTGAGGACAACTTTTAGAATTCGGtcatgttagctaatgctagctaacgttagctagcgctagcctTAGCCTAAATATCCATTTTGAACTGATGTTTGGCAAGGATGTGACAGTATTTGTTGCTCTAATTGTGTTGTAATGTGTTTGTAGAGAGGAAAATGCCAGgcggagagagaagaaaagagatcacCTGCCAGAGGGACTGAAGCAAGTAAAAAGatgctCATACACAGCAGATGGGGACAGCCAGCGTCACCCAATTTACTTTTGCCCAGGCTGTGCAACAGTTGCTGCACTATGCGTCAGACCGGGCAGGATGGACTGGACGACAAACCAGTCAGACGTCAGAGGACCATGAACTGTAACTATGCTAAAGaggacaaataatgaaataagaggctaataaaatgaatttgtttttaccttAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639406.1 True 633 lncRNA 0.41 2 33876175 33877007

Neighbor

gene id symbol gene type direction distance location
paqr3a paqr3,LOC104954486,LOC103364579,LOC102780134 coding upstream 85365 33779007 ~ 33790810 (+)
prkg2 prkg2 coding upstream 532160 33303339 ~ 33344015 (+)
rasgef1ba rasgef1b coding upstream 582074 33156914 ~ 33294101 (+)
LOC120560373 LOC106570904 coding upstream 623768 33248404 ~ 33252407 (+)
wdfy3 NA coding upstream 805665 32957229 ~ 33070510 (+)
cnot6l cnot6l coding downstream 293468 34170475 ~ 34187620 (+)
slc25a25a slc25a25,LOC102778434,LOC103370741 coding downstream 395940 34272947 ~ 34280255 (+)
zdhhc12a zdhhc12,LOC100694502,LOC102293169,LOC101476542 coding downstream 403972 34280979 ~ 34289653 (+)
LOC120560630 set,LOC102777863,LOC107083999,LOC100696975,LOC105014167 coding downstream 433093 34310100 ~ 34314260 (+)
LOC120560629 LOC100693693 coding downstream 439299 34316306 ~ 34330925 (+)
LOC120561187 NA non-coding upstream 103641 33769844 ~ 33772534 (+)
G66571 NA non-coding upstream 120220 33755569 ~ 33755955 (+)
G66568 NA non-coding upstream 150393 33725520 ~ 33725782 (+)
G66522 bmp3 non-coding upstream 523225 33351699 ~ 33352950 (+)
G66521 bmp3,LOC102780994 non-coding upstream 525622 33349506 ~ 33350553 (+)
G66652 NA non-coding downstream 310823 34187830 ~ 34281929 (+)
G66689 NA non-coding downstream 553935 34430942 ~ 34439928 (+)
G66692 LOC104949787,LOC104934882 non-coding downstream 579483 34456490 ~ 34456749 (+)
G66695 NA non-coding downstream 609531 34486538 ~ 34486751 (+)
G66769 NA non-coding downstream 631135 34508142 ~ 34509613 (+)
G66578 NA other upstream 99777 33775925 ~ 33776398 (+)
antxr2a antxr2 other upstream 272550 33517599 ~ 33603625 (+)
cds1 cds1,LOC103364266,LOC106922331,LOC103134889,LOC107386064 other upstream 763359 33077246 ~ 33112816 (+)
slc39a14 slc39a14 other upstream 1263237 32572200 ~ 32612938 (+)
LOC120560610 ypel1,ypelc,YPEL1,ypeld,LOC103374080,LOC106586007,LOC106931471 other upstream 1365438 32477038 ~ 32510737 (+)
cfap157 NA other downstream 637003 34514010 ~ 34527405 (+)
LOC120561070 NA other downstream 888923 34765930 ~ 34773806 (+)
G66832 NA other downstream 984492 34861499 ~ 34864690 (+)
LOC120561428 fam163b,LOC103374717,LOC102797860,LOC101061299,LOC102298266,LOC101485828,LOC104964271,LOC102215914 other downstream 1169837 35046844 ~ 35059631 (+)
LOC120560625 cep120 other downstream 1645658 35522665 ~ 35549231 (+)

Expression


Co-expression Network