LOC120560046 (LOC103358197)


Basic Information

Item Value
gene id LOC120560046
gene name LOC103358197
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4548725 ~ 4557613 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639407.1
ctgccagtccagccatcttcggacccacCACCCCCACTgtcagtccagccatcttcggacccagcacccccactgtcagtccagccatcttcagacccacCACCCCCACTGCCAGCCCACACTCGCAGCTTCAATAAAATAAGATTCTTTACCACCTACTCctaaaaagtaatgtttttcctccattttggAGAGAAGCTGCATCTGCTTTATCATGGATAGAAAATTATGTATGAAGAAGAAGGCtggagaagaagatgaagaggtAATTAGTCCTGACATCATCAAAGACGTCCAGGTTCTGTATCATCCACCCAGTCAGGGCGACTGATCTATAGACCAGACCAGTGTTGTACTCaaagaaatgtgacaaaaattcAGTTTCTAAGGTGTTTTGAAGAGGCTCACTCCACTCTCGTCCAGCCCAGCGGGACCTCTTACCTTCTCGATGGCGAGGTGTGACCCTCCGCACGTGGTGTTTAAGGTGGTCCCTTGAAATGTAGAGCCGGACAATATCTTTGTCTGGGACAGAGTTCAGCATTGCTGGGTTCTTGGCTTTGATGGCCTTGATGAGCAGCTCCAGGTCGGTGCGGTTATAGGCCATCACAGCCCCAGCTAGAGCCGACTTGAACACAGCATCCTTGCAGTGTGCGTATGGCTGCGTCAAACCGGTGGATCCAGCGGAAGATGTCCAGACGCACAACCATACCATTGTCTCCCCAAGGCTGGAACAAAGTCTCCGTCCCTGTTGGTCCCTGTGCACGGCAACACCCACGTTCCACATATAGGATTTTGGGCACAGCTTGATTGGCCAGCCGGAACCTTTCCATGACTCCACGGCACATTGGTTTTAGCTTCTCGGTGGACTCCTCACAGaatacagaatagcATCACAGAAGTGGAGAGGATCTGGTTCCGGTAATCCTGCACATTGTTGGCCTCTGCCAGCAGGACGGGGTGGTGCCGGAGCAGCGCGGATGGAAGCGTTCTCTGAGGAGGTGGAGCCTGGAATGTGTGTCCAAATACAGAGACAATCCCTCCGGTTCTGATACAGTCACGAGGAGTGTGGTGTACAGATCCTTACGATGAAGGTACTCTTCATTATGATTTTCATGTAGCTGCCGCCACACTTTAATCATGGGGTTCCCTTGTACCAGGCAGCAAGTACGAAGGGTGAGAgcccttcctcttcatcctctgaaGACAAGCAGCCTTCTACTCCAAGGCGGCAGCAAGTATGGAGGGGTGAGAGCCCTTCGTCTTCATCTTCTGAAGACAACCAGCCTTCTACCACCAGGTAGCAAGAACGATGGGATGTGAGCTCTTTGTTCTTCGTAGTGTTATGACCCTGGGGTCATATTTAGTAATTTGTCTTTCACCCTGCACTATCAAGCAGCTGTATTTTGTAGCTTGTCTTTCACCCTGCAATATCAATTGATCTCCTGAGGGTACACAGGTGATGGACAACAGGTGCGCACACTGGATTGGTCGCCTGGAGGACAGCAGCCATTTTAAGCCTCGTCGGACAGGAACTCAGCCCCCTCTCTTCGCTCTGCCATTCCCAACATGTGCCTGTGTAAACCTGTGTCTTGTGTAAACCTGTGTCTTGTGTAAACCTGTGTCTTGTGTTCCAAGTTGGTGTGAGTAGTGTTAACAGCCTTCAGTGAAAATGGTTGTTTTGAGTTCTTTGATTTGTTATCCTTCAGCCACTTTGTTTTAGTtgtgaatacatttttctttgtcttattttgCTAGTAGCAGTCTGGTAGGAGTGAGAAgtccttttttatttgctcCCTTTTTCTCCTGTTTTGTTATTAGAAGCTGAGGTTAGAGCTTTGTCTTTTCTTTACCTTTGGATTAGGTAAGTTTAGTTTGCCTTtagaattgttttgtttgttgtgttgggGCCTCATCTCCGAAATAAATAGAAACTGCTACTTTGAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC103358197

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639407.1 True 1948 lncRNA 0.48 3 4548725 4557613

Neighbor

gene id symbol gene type direction distance location
dph7 dph7 coding downstream 4839 4531968 ~ 4543886 (-)
pnpla7b pnpla7 coding downstream 18979 4477275 ~ 4529746 (-)
LOC120560167 NA coding downstream 77245 4461429 ~ 4471480 (-)
isl1a isl1,LOC103469637,LOC107374027,LOC107661270,LOC103141950,LOC102231175 coding downstream 439502 4103017 ~ 4109223 (-)
ak6 ak6 coding downstream 700215 3844642 ~ 3848510 (-)
LOC120559971 NA coding upstream 81491 4639104 ~ 4642738 (-)
si:ch211-158d24.2 megf9,LOC102787576 coding upstream 86991 4644604 ~ 4695210 (-)
galnt9 galnt9 coding upstream 202503 4760116 ~ 4866975 (-)
si:dkey-112e17.1 LOC103368838 coding upstream 864008 5421621 ~ 5445464 (-)
pgam5 pgam5 coding upstream 931143 5488756 ~ 5498896 (-)
G59207 NA non-coding downstream 87654 4454690 ~ 4461071 (-)
G59197 NA non-coding downstream 134744 4413759 ~ 4413981 (-)
G59101 NA non-coding downstream 361253 4187261 ~ 4187472 (-)
G59098 NA non-coding downstream 364808 4183353 ~ 4183917 (-)
LOC120560054 NA non-coding downstream 445811 4099798 ~ 4102914 (-)
G59241 NA non-coding upstream 67425 4625038 ~ 4625307 (-)
G59268 NA non-coding upstream 78295 4635908 ~ 4704273 (-)
G59287 NA non-coding upstream 175017 4732630 ~ 4842143 (-)
G59290 NA non-coding upstream 180436 4738049 ~ 4741131 (-)
G59312 NA non-coding upstream 391658 4949271 ~ 4949523 (-)
LOC120560375 NA other downstream 112409 4432844 ~ 4436316 (-)
sub1b sub1 other downstream 118635 4424149 ~ 4430090 (-)
golph3a golph3,LOC103397487,LOC108249570 other downstream 324157 4209748 ~ 4224568 (-)
G58994 NA other downstream 859387 3688629 ~ 3689338 (-)
G58920 LOC106099046,LOC107687292,LOC107712180,LOC107663003 other downstream 1131871 3415627 ~ 3416854 (-)
LOC120561493 NA other upstream 908610 5466223 ~ 5466437 (-)
LOC120561494 NA other upstream 1031960 5589573 ~ 5591810 (-)
G59521 NA other upstream 1868593 6426206 ~ 6426811 (-)
G59563 NA other upstream 1965146 6522759 ~ 6523674 (-)
G59739 LOC102786375,LOC102210956 other upstream 2433590 6991203 ~ 6996856 (-)

Expression


Co-expression Network