LOC120560056


Basic Information

Item Value
gene id LOC120560056
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25034709 ~ 25040898 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639412.1
TATAGGAGAGGGGGTTGGCAGTATAACAATGGGCATGATTTAGCTAATTTGACTAACAAGGGAGATGGTACCCCCCTCAAAAGGCCTGACGCTTTGGGCTATAGGCCGCCGCCTATGGGTTAGCTAAAGTTATTATAGATTACTCTCTGGTATCTGCTCCCCTGTGATCAAAGTCACCTGACCAGAGTAAAGTCCTGTTTTTCAACTCCCCCAGCTGGCCGTGCGAGGCTTCGCTCATGGCTTTGGTCTGCATACACATCTTGTATTTGTCTGGAGGGAGCTCGTCTGCACAGTTCTTCTCGTGCCACAAGTGGAAAAGGCCTCTGGACGGAGAGCGAATCACCATCAGCTTACTGTGAAGGTTCAGCGTTGAGACGACAGGAAGTTAAGAAGTCGGCGGTAAAGTGGATGTCAACATCACAGAAGAAGAGCAGGACATTCTGACTGCGCCTCCAAGCCCTGGCGCCCACTTCTAAGCCCCGACCACGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639412.1 True 491 lncRNA 0.51 3 25034709 25040898

Neighbor

gene id symbol gene type direction distance location
LOC120560335 LOC104920830,LOC101074081,LOC103362722,LOC101475228,LOC102784348,LOC101160076 coding upstream 11021 25019069 ~ 25023688 (+)
loxhd1b LOC108233688,LOC105931393,LOC106513687,LOC106924721 coding upstream 34245 24974336 ~ 25000464 (+)
ptger4a LOC103360740,LOC104967800 coding upstream 72231 24958162 ~ 24962478 (+)
mrps27 mrps27,LOC106943511 coding upstream 86182 24935660 ~ 24948527 (+)
znf366 znf366 coding upstream 102115 24924529 ~ 24932594 (+)
ostf1 ostf1 coding downstream 39409 25080307 ~ 25088646 (+)
atxn2 atxn2 coding downstream 67059 25107957 ~ 25139788 (+)
hsd17b4 hsd17b4 coding downstream 192317 25233215 ~ 25259169 (+)
sema6a sema6a,LOC102790561 coding downstream 295126 25336024 ~ 25445140 (+)
cdo1 cdo1,LOC102791980 coding downstream 526806 25567704 ~ 25573107 (+)
G64287 NA non-coding upstream 142192 24876562 ~ 24892517 (+)
G64279 NA non-coding upstream 171979 24860249 ~ 24862730 (+)
LOC120560123 NA non-coding upstream 515836 24514819 ~ 24518873 (+)
G64251 NA non-coding upstream 671800 24362475 ~ 24362909 (+)
G64235 NA non-coding upstream 800221 24234274 ~ 24234488 (+)
G64392 NA non-coding downstream 169026 25209924 ~ 25210170 (+)
G64450 NA non-coding downstream 218818 25259716 ~ 25302920 (+)
G64489 NA non-coding downstream 465266 25506164 ~ 25506568 (+)
LOC120560635 NA non-coding downstream 507125 25548023 ~ 25552264 (+)
G64495 NA non-coding downstream 512041 25552939 ~ 25555781 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other upstream 197261 24823718 ~ 24837448 (+)
prxl2c aaed1 other upstream 211643 24821314 ~ 24823066 (+)
G64108 NA other upstream 1341418 23692662 ~ 23693291 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other upstream 1472424 23487967 ~ 23562285 (+)
G63905 NA other upstream 2104504 22929899 ~ 22930205 (+)
LOC120561182 LOC104948667,LOC104930137,LOC103397628,LOC103366370,LOC107092578,LOC102226292,LOC106956829,LOC106919698,LOC103470079,LOC103141747 other downstream 644066 25684964 ~ 25696576 (+)
LOC120560031 LOC104941040,LOC103357154,LOC102795853 other downstream 873381 25914279 ~ 25915577 (+)
LOC120560359 NA other downstream 885189 25926087 ~ 25928596 (+)
nsd3 whsc1l1 other downstream 1318222 26359120 ~ 26383843 (+)
G64814 cldn5,LOC103357131 other downstream 1371971 26412869 ~ 26414597 (+)

Expression


Co-expression Network