LOC120560273


Basic Information

Item Value
gene id LOC120560273
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21608823 ~ 21620711 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639467.1
TCCATAGTGGTGGCTGGGCCCTGTGCTGACCGACCAGCAGGAGTGGGCAGTGGTGGAAATGTAGAGGGCCAGGAATGATAAACGGCTGTCGGAAATGAAGCAAGGCAATTGAGGAGAACAATGACACCTTTGCCAGCCTGCATATCCATCTCATAAATACAGGAGTCTCTGTAGCTCCGTCGGGCATGGACACTTACTCCATCCATTTGTCCgacgcatgcgcaaaagaacaacaCAGAGCAAAGCGTCCTCTACTTCACCACCCAGGACCTTGATGTTGGACGGCCCCAACAGAAGCATCCCAAGTCTGCAAACCATCTGCCCTTGCAGCTGCAGCTTCACACCAGGCCTGAGGGTTAAGAGCCAACAATCCCAATGGAAAATATAGCTTCCTTTTTCAAAAATATGGTACAAAAGTTTCAGAAAACCTATTGTGTTTTCTTAATTCTTGAGAAACTGGCAGTGACATAGCAGTAATGTGTTTATTACAGTAACTTTATATTAACATATAAATAAGTTACAGCAGTCCCTATGTTTCCCTTAGCTTCCATTAACTTGAACACATTTTTCGTTGTTAAAACTAGAGACACAGTTGCTAGAAAGATGTAACCAAAACACGTCGgtagcagcaaaaaaacaccacaatgCAGTTCAATGTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639467.1 True 661 lncRNA 0.44 3 21608823 21620711

Neighbor

gene id symbol gene type direction distance location
agtpbp1 agtpbp1 coding upstream 150476 21428343 ~ 21458347 (+)
golm1 golm1 coding upstream 198093 21403963 ~ 21410730 (+)
LOC120561163 lmbrd2 coding upstream 205433 21393773 ~ 21403390 (+)
LOC120560913 gdnf,LOC103362940,LOC102209597,LOC101471543,LOC102304722,LOC106526208 coding upstream 326315 21278402 ~ 21282508 (+)
si:ch73-72b7.1 unc5c,LOC102797243,LOC102309063,LOC102212007 coding upstream 558974 20849986 ~ 21049849 (+)
hnrnpk hnrnpk coding downstream 6301 21627012 ~ 21641536 (+)
c6h9orf64 LOC103366756,LOC102204152,LOC102298164 coding downstream 22186 21642897 ~ 21649576 (+)
LOC120561417 kif27 coding downstream 29746 21650457 ~ 21660743 (+)
gkap1 gkap1,LOC102779162 coding downstream 40992 21661703 ~ 21672091 (+)
LOC120560432 NA coding downstream 51496 21672207 ~ 21679064 (+)
G63628 NA non-coding upstream 121785 21486769 ~ 21487038 (+)
G63627 NA non-coding upstream 124157 21479780 ~ 21484666 (+)
G63576 NA non-coding upstream 261306 21346367 ~ 21347517 (+)
G63545 nipbl,LOC104950412 non-coding upstream 294732 21312753 ~ 21314091 (+)
G63511 NA non-coding upstream 386172 21164816 ~ 21222651 (+)
G63714 NA non-coding downstream 224121 21844832 ~ 21845138 (+)
G63715 NA non-coding downstream 254734 21875445 ~ 21875687 (+)
G63792 NA non-coding downstream 511173 22131884 ~ 22150124 (+)
G63872 NA non-coding downstream 1283324 22904035 ~ 22905966 (+)
G63914 NA non-coding downstream 1366470 22987181 ~ 22988040 (+)
LOC120560787 NA other upstream 9534 21588876 ~ 21599289 (+)
G63480 rbm19 other upstream 930907 20676417 ~ 20677916 (+)
wdr31 wdr31,LOC102796061 other upstream 1118237 20473651 ~ 20490586 (+)
vps13a vps13a other upstream 1166730 20400947 ~ 20442093 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other upstream 1845299 19759596 ~ 19763524 (+)
G63905 NA other downstream 1309188 22929899 ~ 22930205 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other downstream 1867256 23487967 ~ 23562285 (+)
G64108 NA other downstream 2071951 23692662 ~ 23693291 (+)
prxl2c aaed1 other downstream 3200603 24821314 ~ 24823066 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other downstream 3203007 24823718 ~ 24837448 (+)

Expression


Co-expression Network