LOC120560275


Basic Information

Item Value
gene id LOC120560275
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20558340 ~ 20564445 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639468.1
TGTCACACAGCTTCACAATTGCGTATGGACTGCGGAAAAGAAACACTTAGCTAGGCTAGCTAAGCTAGCCTACTTGAGTTATTTTGAAGCCAGTTAACGTTATACTTTGGTGTTACAAAAATACAAGAGAAAGTTAACATTTGAATGAAACAAGCGGGAGTTAGCTTCAGTGTTGCTAATGATAACAGCTAATGTTTTTGCAAGAGTAGTAAGCTAGCAGCCATAAAGAGAGGACATGAGGGCTTCTGTcagcaagcaaacaaacaacaagTGCAGTGGGATAATGGCTAATGGACTTTGATCATTTCGTCTTCAAATGGACCACTCTCCATGGGGAAAATGAGAATGGACTTTGACATCAAATAACgggACTAAGAAACAAACGGAGGCTGCCCTAGCATCACCAGAAGGGAGACAtgaggaagagagggaaagCGTCAGTCTGCTTGCTGGAGAATATTCTGAGAGGAACTTTGCCCGCAACGTGCAAAGtcttGAAGCAACGCCGTCATCGCCAGCTGAGTCTGATCACCGCTTCATGTTGAACATACTTTTATACAGCATAAAGTCATGTTTGAATAAAGGTTATAATAAAGATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639468.1 True 599 lncRNA 0.42 3 20558340 20564445

Neighbor

gene id symbol gene type direction distance location
stpg2 NA coding upstream 6521 20499130 ~ 20551819 (+)
LOC120560324 NA coding upstream 157348 20397583 ~ 20400992 (+)
LOC120560540 NA coding upstream 162223 20394843 ~ 20396117 (+)
foxb2 foxb2 coding upstream 176849 20353242 ~ 20381491 (+)
LOC120560539 NA coding upstream 230437 20312561 ~ 20327903 (+)
si:ch73-72b7.1 unc5c,LOC102797243,LOC102309063,LOC102212007 coding downstream 285541 20849986 ~ 21049849 (+)
LOC120560913 gdnf,LOC103362940,LOC102209597,LOC101471543,LOC102304722,LOC106526208 coding downstream 713957 21278402 ~ 21282508 (+)
LOC120561163 lmbrd2 coding downstream 829328 21393773 ~ 21403390 (+)
golm1 golm1 coding downstream 839518 21403963 ~ 21410730 (+)
agtpbp1 agtpbp1 coding downstream 863898 21428343 ~ 21458347 (+)
G63377 NA non-coding upstream 115388 20442154 ~ 20442952 (+)
G63385 NA non-coding upstream 165709 20392407 ~ 20392631 (+)
G63204 NA non-coding upstream 531174 20026910 ~ 20027166 (+)
G63203 NA non-coding upstream 531585 20025755 ~ 20026755 (+)
G63202 NA non-coding upstream 532592 20024913 ~ 20025748 (+)
G63451 NA non-coding downstream 1223 20565668 ~ 20566142 (+)
G63457 NA non-coding downstream 71144 20635589 ~ 20637358 (+)
G63460 NA non-coding downstream 76313 20640758 ~ 20641102 (+)
G63465 NA non-coding downstream 78472 20642917 ~ 20643272 (+)
G63468 NA non-coding downstream 81747 20646192 ~ 20647497 (+)
wdr31 wdr31,LOC102796061 other upstream 67754 20473651 ~ 20490586 (+)
vps13a vps13a other upstream 116247 20400947 ~ 20442093 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other upstream 794816 19759596 ~ 19763524 (+)
rasl10a rasl10a other upstream 1109390 19430401 ~ 19448950 (+)
tmem119a LOC103353570,LOC104946818 other upstream 1476686 19076561 ~ 19081654 (+)
G63480 rbm19 other downstream 111972 20676417 ~ 20677916 (+)
LOC120560787 NA other downstream 1024431 21588876 ~ 21599289 (+)
G63905 NA other downstream 2365454 22929899 ~ 22930205 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other downstream 2923522 23487967 ~ 23562285 (+)
G64108 NA other downstream 3128217 23692662 ~ 23693291 (+)

Expression


Co-expression Network