LOC120560290


Basic Information

Item Value
gene id LOC120560290
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8597542 ~ 8598388 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639469.1
CGCCACACTGGACGGTATTCTAGGCCACCGTCTAGCATACTCGAGCCACCGCGTTCTGGGAGACGATCGTCTGCTCCGAGAACACTCCACCATTGGATGAGAGTCTTCAAGCTACTGCACTAGAACCTGTGGACAGTTTCCTGCTGGATCCAGTCGCCCCTAACACAAGACCCAGCACCAGTGCACCCAGCACCAGTTTCTGTGTCGCTCCTGTTGGCACCAGTACCCCCTGTCGCCTTACACCAGCAAAGAGAAAGAGGCCTGATTCCAGTATCCTTTTAATGGTGGAAAACCTGCTGGATTCAGATGCTGAACTGTAGTGATTCCCACTATGGTGAAATACTGCAATTTCTTAAAGGCCAAAACAGAGGCTGAGGAGCGTGCAGCTTTGGTGGCAAGGGAGGAAGAGATGAAGCGCTTCAAGGCTCACTGGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639469.1 True 436 lncRNA 0.53 3 8597542 8598388

Neighbor

gene id symbol gene type direction distance location
LOC120560486 LOC107690107 coding upstream 115364 8465171 ~ 8482178 (+)
LOC120560868 NA coding upstream 194973 8331385 ~ 8402569 (+)
LOC120560867 NA coding upstream 208424 8387822 ~ 8389118 (+)
bicdl1 bicdl1 coding upstream 393356 8172560 ~ 8204186 (+)
LOC120560501 mtmr3,LOC103152423 coding upstream 514168 8078302 ~ 8083374 (+)
zgc:110329 LOC103366798,LOC104939353,LOC104956029 coding downstream 212166 8810554 ~ 8836973 (+)
slc4a5a slc4a5,LOC100703988,LOC101470466,LOC102293566,LOC102195261 coding downstream 263582 8861970 ~ 8907724 (+)
zgc:113436 LOC102776507 coding downstream 323895 8922283 ~ 8933253 (+)
LOC120560802 abcb9,LOC106965289 coding downstream 341441 8939829 ~ 8965106 (+)
LOC120560490 abcb9 coding downstream 373898 8972286 ~ 8989363 (+)
G60182 NA non-coding upstream 6069 8591253 ~ 8591473 (+)
G60177 NA non-coding upstream 114420 8482895 ~ 8483122 (+)
G60174 NA non-coding upstream 118655 8478579 ~ 8478887 (+)
trnaw-cca_8 NA non-coding upstream 143672 8453799 ~ 8453870 (+)
trnaw-cca_7 NA non-coding upstream 145998 8451473 ~ 8451544 (+)
G60189 NA non-coding downstream 48833 8647221 ~ 8647449 (+)
G60201 NA non-coding downstream 133325 8731713 ~ 8731922 (+)
G60223 NA non-coding downstream 186265 8784653 ~ 8784920 (+)
G60229 NA non-coding downstream 235239 8833627 ~ 8856430 (+)
G60232 NA non-coding downstream 255885 8854273 ~ 8929828 (+)
LOC120560007 NA other upstream 162870 8431537 ~ 8434672 (+)
LOC120560006 NA other upstream 169797 8423189 ~ 8427745 (+)
cux2b cux2,LOC102795992 other upstream 546202 7947252 ~ 8051340 (+)
atp2a2a atp2a2,LOC102794349,LOC101476777,LOC102310403 other upstream 719171 7847671 ~ 7878371 (+)
zbtb26 LOC104940087,LOC100710858,LOC102306976,LOC102206222,LOC101473380,LOC102792103 other upstream 967362 7625736 ~ 7630180 (+)
vps37ba vps37b,vps37c,LOC102776795 other downstream 393053 8991441 ~ 9014903 (+)
ppp3cca LOC104934810,LOC100705072,LOC105915415,LOC101486266,LOC102777092,LOC103366803,LOC102200614,LOC101072650,LOC106932221 other downstream 419503 9017891 ~ 9055765 (+)
LOC120560959 golga7,LOC104937560,LOC106585131 other downstream 1328562 9926950 ~ 9981054 (+)
LOC120561142 NA other downstream 2128050 10726438 ~ 10746953 (+)
LOC120561144 NA other downstream 2149728 10748116 ~ 10752440 (+)

Expression


Co-expression Network