LOC120560848


Basic Information

Item Value
gene id LOC120560848
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15540869 ~ 15545477 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639524.1
CTCTTGCTGGCAAAAGTTGTCATAGATGCAGCCAAAAAACAAGGCACAAAAGTGGTGGAAGCCGAggaaaaaattaaaacctgGCTGAAGTACAGTGGAGACCGAaatggaggaagaaaaaaaagagcaacagAAAAAGAAAAGCAGATGCCTCCCCCCTCATGCAGATTCCAGCAGCTGCGAAAGTGAATgaaAAGATGCTGCtacttctcctcctctgctccgTCTTCATCATAAGAGCCACACACAATCTAATTTGCTTCAAATCTGCAAAAAACTGCAGAATACAGAAGAGAATCTGCACATTTTCTTAGTTTTCAGCTGGGATTTTTTGGCCTTCTTCCGCATTTTCTTTGCCGCCTTTTTGGTTTCCTTGTTGTTGATTtctttgactttattttttacttatcTTAGCATTTTTCCACTGACTgcctttgtgttgttgtttttttcaactattttgtcAATCGGCTCACATcctgtgttatttatttattatgtgctCAAGTTTTTCCAACAACAGCACCACAAGACGTGAACTGCATTAAATTGTAATGTTAATTTTGTTACCAATAAATAGGTTTATTTTTATAACCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639524.1 True 598 lncRNA 0.38 4 15540869 15545477

Neighbor

gene id symbol gene type direction distance location
LOC120560525 NA coding upstream 20464 15508922 ~ 15520405 (+)
LOC120560844 LOC104935222,LOC101481450,LOC102294942,LOC106534038,LOC108245882,LOC100710015,LOC107386134 coding upstream 73461 15435741 ~ 15467408 (+)
LOC120560841 ppp2cb,LOC100710281,LOC105920955,LOC101157601,LOC103131405 coding upstream 110287 15416456 ~ 15430582 (+)
mak16 mak16 coding upstream 234769 15298400 ~ 15306100 (+)
LOC120560850 LOC104965067,LOC101155523 coding downstream 13027 15558504 ~ 15562994 (+)
LOC120561471 NA coding downstream 59489 15604966 ~ 15612582 (+)
trnac-gca_19 NA coding downstream 72408 15617885 ~ 15617956 (+)
trnac-gca_20 NA coding downstream 73267 15618744 ~ 15618815 (+)
trnac-gca_21 NA coding downstream 73596 15619073 ~ 15619144 (+)
LOC120560847 NA non-coding upstream 1025 15539355 ~ 15539844 (+)
G61782 LOC106527778 non-coding upstream 164867 15374777 ~ 15376002 (+)
G61770 LOC103398011,LOC102234551,LOC103373450,LOC107386141,LOC106527788 non-coding upstream 226291 15306447 ~ 15314578 (+)
G61757 NA non-coding upstream 299427 15240416 ~ 15241442 (+)
G61754 NA non-coding upstream 315900 15224547 ~ 15224969 (+)
G61966 NA non-coding downstream 416124 15961601 ~ 16045838 (+)
G61968 NA non-coding downstream 489974 16035451 ~ 16056705 (+)
G61970 NA non-coding downstream 502906 16048383 ~ 16050693 (+)
G61975 NA non-coding downstream 577723 16123200 ~ 16198871 (+)
LOC120560394 NA non-coding downstream 589117 16134594 ~ 16142799 (+)
LOC120560526 NA other upstream 8073 15518780 ~ 15532796 (+)
zgc:101664 NA other upstream 105934 15431708 ~ 15434935 (+)
spinb spin1,LOC103373448,LOC108245887,LOC101477468,LOC100698355,LOC106527790 other upstream 188244 15249744 ~ 15352625 (+)
nudt18 nudt18,LOC104957221 other upstream 316854 15219137 ~ 15224015 (+)
G61535 LOC103368073 other upstream 457421 15078874 ~ 15083448 (+)
mctp1a mctp1,LOC102782783 other downstream 91321 15636798 ~ 15777141 (+)
fam172a fam172a,LOC102785942 other downstream 398221 15943698 ~ 16099484 (+)
LOC120560890 NA other downstream 922833 16468310 ~ 16475905 (+)
LOC120560897 LOC105925468 other downstream 987439 16532916 ~ 16534175 (+)
LOC120560947 edil3 other downstream 1740171 17285648 ~ 17414595 (+)

Expression


Co-expression Network