LOC120560938


Basic Information

Item Value
gene id LOC120560938
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14497781 ~ 14499057 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639538.1
ACTACCAACAATGGCGTCAAAACAGAAGGGCCAAGTTCCTGTGTCAGTTTACCTTGTAGATGGCTGACCGTCACCTGTCCGAAAGGCAATACACTTTTTGCAGGTGGTGACGCCTGAAAGCCAGAACGGCGACAGGTCAGCTGCACATTGTTGTGAGCAAGGGAACCGTTACTCAACCTTTAAAATGCCCCAAATAACCGCTTCCAGTATGACCGGAAGATATGAGAGCAGAGCGGCGGTATGTTAACTAATTTTGGTTTGGTTACAGCCACATATTACAAGCCCAATGTGCCTCTTAAGTGTAGCTTGGGATTTTTAAAACCGCTCAAATTGTgaaattgacttgactttatTTTCCCAACCAAGAGGTTCCCAATGTCCTAAATACATCCCTGAAAGTTGGCCTTTTAGCCTGCCTTTTTCCATGCTCCAACAAAGTACACAATGAAGACATATAACTTGAGGAAAGTTATAAAATCTTACATTAGAGGACTAGTGGGAAACTATTGTGATTGTAAACTCACATTATACTTTGTTTACCTTTTGCAGGAAACGTTCAGCGTTGGATAAAAATAGCCACCTTTAGGAGGTTTGTCTGGTAACTATGAGTGAAAGAGTGGTGGGTGTTGTAGAGCTCCTCTTAAACGTCTGCTAATGgatcttgttttctttttcatctccTAGAATCGGTGGGGAGCCAGATGGGCGGCCGGTGAGGAGGGCAGAGCTCGAGGCAAGGAACAGAGCCTGCCCTCCTCACCTCCGGAGCTGTTATCCTGCTGAGCTAGACGTTAGTAACGAGGAACACCGcagcccgggttcgaatccgaccccgtggccctttgctgcatgttgtccctcctctctctctctctccctttcctaTCTTCTAGCTATTCTGTTGAATTTTAAAGGCCATAAAAAGCCCAATAAATGAACTAGTTGACCACTTGAGTAGCAAATGCACTGTATTGATTtagtgcttttatccaaagcactTCACAATTTGGCTCTTATTCACCACtattccccacac
>XR_005639539.1
GTCACCGGCATCGAGCTACTACCAACAATGGCGTCAAAACAGAAGGGTTTACCTTGTAGATGGCTGACCGTCACCTGTCCGAAAGGCAATACACTTTTTGCAGGTGGTGACGCCTGAAAGCCAGAACGGCGACAGGTCAGCTGCACATTGTTGTGAGCAAGGGAACCGTTACTCAACCTTTAAAATGCCCCAAATAACCGCTTCCAGTATGACCGGAAGATATGAGAGCAGAGCGGCGGTATGTTAACTAATTTTGGTTTGGTTACAGCCACATATTACAAGCCCAATGTGCCTCTTAAGTGTAGCTTGGGATTTTTAAAACCGCTCAAATTGTgaaattgacttgactttatTTTCCCAACCAAGAGGTTCCCAATGTCCTAAATACATCCCTGAAAGTTGGCCTTTTAGCCTGCCTTTTTCCATGCTCCAACAAAGTACACAATGAAGACATATAACTTGAGGAAAGTTATAAAATCTTACATTAGAGGACTAGTGGGAAACTATTGTGATTGTAAACTCACATTATACTTTGTTTACCTTTTGCAGGAAACGTTCAGCGTTGGATAAAAATAGCCACCTTTAGGAGGTTTGTCTGGTAACTATGAGTGAAAGAGTGGTGGGTGTTGTAGAGCTCCTCTTAAACGTCTGCTAATGgatcttgttttctttttcatctccTAGAATCGGTGGGGAGCCAGATGGGCGGCCGGTGAGGAGGGCAGAGCTCGAGGCAAGGAACAGAGCCTGCCCTCCTCACCTCCGGAGCTGTTATCCTGCTGAGCTAGACGTTAGTAACGAGGAACACCGcagcccgggttcgaatccgaccccgtggccctttgctgcatgttgtccctcctctctctctctctccctttcctaTCTTCTAGCTATTCTGTTGAATTTTAAAGGCCATAAAAAGCCCAATAAATGAACTAGTTGACCACTTGAGTAGCAAATGCACTGTATTGATTtagtgcttttatccaaagcactTCACAATTTGGCTCTTATTCACCACtattccccacac
>XR_005639540.1
ATATTCTTTAATTTCTCATAAATGTTGATAATGACATTTAGTATGCCGTTTATACCTGTTACAGCCAAGTTCCTGTGTCAGTTTACCTTGTAGATGGCTGACCGTCACCTGTCCGAAAGGCAATACACTTTTTGCAGGTGGTGACGCCTGAAAGCCAGAACGGCGACAGGTCAGCTGCACATTGTTGTGAGCAAGGGAACCGTTACTCAACCTTTAAAATGCCCCAAATAACCGCTTCCAGTATGACCGGAAGATATGAGAGCAGAGCGGCGGAAACGTTCAGCGTTGGATAAAAATAGCCACCTTTAGGAGGTTTGTCTGGTAACTATGAGTGAAAGAGTGGTGGGTGTTGTAGAGCTCCTCTTAAACGTCTGCTAATGgatcttgttttctttttcatctccTAGAATCGGTGGGGAGCCAGATGGGCGGCCGGTGAGGAGGGCAGAGCTCGAGGCAAGGAACAGAGCCTGCCCTCCTCACCTCCGGAGCTGTTATCCTGCTGAGCTAGACGTTAGTAACGAGGAACACCGcagcccgggttcgaatccgaccccgtggccctttgctgcatgttgtccctcctctctctctctctccctttcctaTCTTCTAGCTATTCTGTTGAATTTTAAAGGCCATAAAAAGCCCAATAAATGAACTAGTTGACCACTTGAGTAGCAAATGCACTGTATTGATTtagtgcttttatccaaagcactTCACAATTTGGCTCTTATTCACCACtattccccacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639538.1 False 1036 lncRNA 0.45 3 14497798 14499057
XR_005639539.1 True 1036 lncRNA 0.45 3 14497781 14499057
XR_005639540.1 False 759 lncRNA 0.47 3 14497838 14499057

Neighbor

gene id symbol gene type direction distance location
pla2g1b NA coding upstream 43535 14450851 ~ 14454246 (+)
prkab1b LOC103353610,LOC101165238 coding upstream 52629 14437825 ~ 14445152 (+)
msi1b msi1,LOC100704609 coding upstream 68349 14405140 ~ 14429432 (+)
unc119.1 unc119b coding upstream 114554 14377254 ~ 14383227 (+)
idua idua coding upstream 251476 14234278 ~ 14246305 (+)
cfap77 NA coding downstream 49622 14548679 ~ 14555480 (+)
barhl1a NA coding downstream 57332 14556389 ~ 14563699 (+)
LOC120560602 LOC108248102,LOC106527805,LOC101064502,LOC101174676 coding downstream 127564 14626621 ~ 14642212 (+)
LOC120561189 LOC102300215,LOC108165969 coding downstream 147670 14646727 ~ 14666265 (+)
grin1b grin1,LOC101175170,LOC102209996,LOC108248095,LOC107386166,LOC101469542,LOC102312845 coding downstream 178614 14677671 ~ 14753400 (+)
LOC120561032 NA non-coding upstream 25592 14469197 ~ 14472189 (+)
LOC120561034 NA non-coding upstream 32056 14465003 ~ 14465725 (+)
G61450 NA non-coding upstream 93609 14403633 ~ 14404172 (+)
G61449 NA non-coding upstream 95019 14402055 ~ 14402762 (+)
G61448 NA non-coding upstream 95900 14401231 ~ 14401881 (+)
G61468 NA non-coding downstream 123 14499180 ~ 14499434 (+)
G61513 NA non-coding downstream 177080 14676137 ~ 14677372 (+)
G61539 NA non-coding downstream 527384 15026441 ~ 15027400 (+)
G61540 NA non-coding downstream 528548 15027605 ~ 15027818 (+)
G61730 LOC102301232,LOC102776762,LOC101476977 non-coding downstream 647043 15146100 ~ 15152551 (+)
LOC120560925 NA other upstream 63184 14431330 ~ 14434597 (+)
c6h12orf43 NA other upstream 105198 14389471 ~ 14392583 (+)
G61390 crybb2,LOC108234953,LOC100703162 other upstream 178275 14317539 ~ 14319506 (+)
G61383 NA other upstream 213910 14283417 ~ 14283871 (+)
LOC120560400 tmem150a,LOC106585116 other upstream 216010 14252256 ~ 14281771 (+)
G61514 surf4,LOC103397973,LOC102307728,LOC100699423,LOC101479701,LOC101465012 other downstream 200468 14699525 ~ 14794602 (+)
LOC120561401 NA other downstream 256393 14755450 ~ 14762549 (+)
surf4l surf4,LOC103397973,LOC102307728,LOC100699423,LOC101479701,LOC101465012 other downstream 275456 14774513 ~ 14795943 (+)
cntrl NA other downstream 429316 14928373 ~ 14979797 (+)
G61535 LOC103368073 other downstream 579817 15078874 ~ 15083448 (+)

Expression


Co-expression Network