LOC120561187


Basic Information

Item Value
gene id LOC120561187
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 33769844 ~ 33772534 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639570.1
TATTGTTATACAGATGAAactttcccaaaaaaaaagaagtacaaGGAGACTAAGCAACAATGCCATTTCATTCCCAGAAAGAGCTCAGTGGCCCAGATGCTACGAAGATAGATGCAGACATTATTGCTGGAACATTTGTTGATGCAACATTTcagttttacttcttttttccCAGTTTGTGATGTATTGCTCTACATATGGCCTCCAAGCAGAAAAtgAGCTGTGGAGAAAGCAATCAGAGGGGACACCCGTCCTATTCTGGAGATCATTGCATCACCAAACGTTCCTGGCAAGACTTTTTTCTACAAACAAGGAAGAGCAAAGAGCTGTCCCCCACACTTTGTGTCAAGGCCTAAAGCACGGTCAGCCAGAGACATCCAGACGTCCTCGATGTGAAGAGAAGAGgatgggagaggaggagaaactCTGTGTGTCACAGAAGGGGGGAGGAAAAGGCGAGGCCGCATCAGACGACTGCCGAGCTACATCCAAGTGTCAGGGTCCCAAAATAGTGGCGAGCAACGACCAGACTGAAGATACCAAACAAACAACAGCTCTCAGATCAAGTAAACATCGGCTAACACACAAGACACGACAAACTGTGAAGCCTCCCTCTGTCTTCCGGTGTCGTTAATCAGAGCTGCGGAGAAAGCAATCGGAGGGGACACCCGTCCTATTAGAGGAGGCTGCAGCCGTCTCTCCCCTCCTCTGACCGGAGTCCTCGCAAACACTTTGCCTTCGAAAAAACGTTGACAAGCTCCCTCTGTGTGGTGCTGTGTggacacagaggacagagtcTCGTCTCCAGCAGATGTCTTGTGGCGCAGACTATAAATAAAGCCAATGAGACCAGCCGGCCGCTGACGAGCACAAGCCGCCGCGAGGCCGTGTTAGTTTTGCAAAAGGCCTGTCTAGTCTTGGCACGGCAGGCGGGCTAACATTTGGCGGGCCCCGTGTTGAAGCCTGCGGGCTTTGTGTTTAGGGTTTGAGAGGAAAATAAAGATTCTAGCCCCTAAAGTTGAGGTTTTATCAAAAGTTGTTTTCCGTGTTGGGGCAGGTGTGAGAGGAAATGGTGGAAGCTGAGGTGCACAAAGCTCTATAGAGAGCATAGAGGCGCGTAGGGAAACGGAAACATGGATGCAGTGGAAAACATGTCATGCAGTGTTAATTTCTCCTCTGTGCAGTAACATATAGCCAATTTAGCAAGCGTTTAACATCAGTGAGAAGAAGTATAACATCCAATGTATTCACCATATCGTAATGTGCCATTAAATGGGGTGCAACAGTCAGAGAAGAGCGCACCAGTGTAGCCTTGTGTTTCATTGATGACCCTGACAATCCCAAAGGACATCGGTGGCCCTGgggcctgtctgtctctatttaAACCACTTTAACAGCCCCTTGTTTGGAAAGGAGAGACTTTCATTTGCCAAGACAGTGTAGGCACCCTCGATTAAGATGTAATGCAGTGCCGTTTTATTGCACATTTCATTGTAGGACGCACCCACAGTTAGCGCTTTAAGAAGGAAAATATCCCAGGTCGGCCATAACATGGAACACTTACAGCATCTCTGCGATAATCAGCACAAATGGGATATTTTGACACTGATAAAATGGCCGATACACAAATCACCTCCTGCttttttgaagaaacatttagaGTATACTGCCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639570.1 True 1673 lncRNA 0.47 3 33769844 33772534

Neighbor

gene id symbol gene type direction distance location
prkg2 prkg2 coding upstream 425829 33303339 ~ 33344015 (+)
rasgef1ba rasgef1b coding upstream 475743 33156914 ~ 33294101 (+)
LOC120560373 LOC106570904 coding upstream 517437 33248404 ~ 33252407 (+)
wdfy3 NA coding upstream 699334 32957229 ~ 33070510 (+)
rusc2 rusc2,LOC104944866 coding upstream 868297 32854714 ~ 32901547 (+)
paqr3a paqr3,LOC104954486,LOC103364579,LOC102780134 coding downstream 6473 33779007 ~ 33790810 (+)
cnot6l cnot6l coding downstream 397941 34170475 ~ 34187620 (+)
slc25a25a slc25a25,LOC102778434,LOC103370741 coding downstream 500413 34272947 ~ 34280255 (+)
zdhhc12a zdhhc12,LOC100694502,LOC102293169,LOC101476542 coding downstream 508445 34280979 ~ 34289653 (+)
LOC120560630 set,LOC102777863,LOC107083999,LOC100696975,LOC105014167 coding downstream 537566 34310100 ~ 34314260 (+)
G66571 NA non-coding upstream 13889 33755569 ~ 33755955 (+)
G66568 NA non-coding upstream 44062 33725520 ~ 33725782 (+)
G66522 bmp3 non-coding upstream 416894 33351699 ~ 33352950 (+)
G66521 bmp3,LOC102780994 non-coding upstream 419291 33349506 ~ 33350553 (+)
G66498 NA non-coding upstream 629751 33139868 ~ 33140093 (+)
LOC120560041 NA non-coding downstream 103641 33876175 ~ 33877007 (+)
G66652 NA non-coding downstream 415296 34187830 ~ 34281929 (+)
G66689 NA non-coding downstream 658408 34430942 ~ 34439928 (+)
G66692 LOC104949787,LOC104934882 non-coding downstream 683956 34456490 ~ 34456749 (+)
G66695 NA non-coding downstream 714004 34486538 ~ 34486751 (+)
antxr2a antxr2 other upstream 166219 33517599 ~ 33603625 (+)
cds1 cds1,LOC103364266,LOC106922331,LOC103134889,LOC107386064 other upstream 657028 33077246 ~ 33112816 (+)
slc39a14 slc39a14 other upstream 1156906 32572200 ~ 32612938 (+)
LOC120560610 ypel1,ypelc,YPEL1,ypeld,LOC103374080,LOC106586007,LOC106931471 other upstream 1259107 32477038 ~ 32510737 (+)
mapk1 mapk1,LOC103371039,LOC107386038 other upstream 1299017 32440375 ~ 32470827 (+)
G66578 NA other downstream 3391 33775925 ~ 33776398 (+)
cfap157 NA other downstream 741476 34514010 ~ 34527405 (+)
LOC120561070 NA other downstream 993396 34765930 ~ 34773806 (+)
G66832 NA other downstream 1088965 34861499 ~ 34864690 (+)
LOC120561428 fam163b,LOC103374717,LOC102797860,LOC101061299,LOC102298266,LOC101485828,LOC104964271,LOC102215914 other downstream 1274310 35046844 ~ 35059631 (+)

Expression


Co-expression Network