LOC120561378


Basic Information

Item Value
gene id LOC120561378
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 13387476 ~ 13390549 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639592.1
AAACTACTTGACGTTCCTCCCGATCTGACTGACCACTGATGAGGTGTACTTGGGCCCACCAGAATCTCCTCAAAGTGAATCAAAATGCCAGTGACACCCATCCCCGGCCCAGATGtcatctttgaataaacaggGTGTCAGTCTGGCTGTGCTCCTACTGCCTGCAGACAGCCTCTGTCAGCGTCAGACCAGGAAATGCCACCTCTCTGCTGACAGCTGCCTGTGCCGTACTCACACCGGCACCCGCAGGGAGAGCCCTGCAGCTCCCCACCCGGCTCCGCGCACTGCCATCCTAAGTGCAGATCCCCAAACCTGCCGTGCAACGCCCTGACAGCACTTCACTGTATATCTAAATAGAGCAGGAGCCCGGCGTGTCCCAGGGAAACTTTTACATTCTGCTCCATTCAGGGAGGATTTGTCACTTGGGAAGGAGGATAATGAAGCAGTGTTTCTTCGCTGGTTGTTCAAGGCAGTCCTTTCCCGTAGACATGGTAATGGCTGGATTGGATTAAATGAGCTCTCCTCCTTGTCAGTCAAGGTGAGGACGGTTGAGATCTGTGGAACGTTTAGGTTTTGTTTTAAGCTGCAAGGGTATTCAATGAATATgataaagttgaaaaaaaaatgaaatgtttttttttgtcagagcTAAACCCACAGCCAAAGTAAATTGCAAATATAATCCTTGTCAATGGTAAAGTTACCTTTTTCCCTTGTTTGGTGTGACGTCCAAAATCCCAATGGAAATGTGTTATTATACCCATGCCACTAttttagtctggatcaatggaaaTACATTTTCAGCATAATTGCCTGACATACAGCGTGTGagcctcaccttccgctctctgtgtgttgccgttctcaaactgttcgcttcaggaaacaacaaacttcgagctagcaagctagccTACaccctgaaaatggcaagtgtTGTGAAAATCTGGACCGTGCAACAAGGCCGGCTttgttctttcagggaatgattatAGAAATTTACaaggaatatgtttacagcatttcgTCTCTAattggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639592.1 True 1039 lncRNA 0.47 3 13387476 13390549

Neighbor

gene id symbol gene type direction distance location
LOC120561257 NA coding downstream 292980 13084483 ~ 13094496 (-)
LOC120560514 LOC107752212,LOC107675959,LOC107679452 coding downstream 326683 13059490 ~ 13060793 (-)
LOC120561259 NA coding downstream 349029 13036828 ~ 13038447 (-)
LOC120561258 NA coding downstream 355559 13025415 ~ 13031917 (-)
LOC120561256 NA coding downstream 439121 12944844 ~ 12948355 (-)
LOC120561314 nr5a1,sf-1 coding upstream 259343 13649892 ~ 13686906 (-)
nr6a1a nr6a1 coding upstream 349804 13740353 ~ 13864440 (-)
LOC120559998 NA coding upstream 572594 13963143 ~ 13972136 (-)
htr7c htr7,LOC104934772,LOC100705941,LOC102292089 coding upstream 716854 14107403 ~ 14142258 (-)
LOC120560956 LOC103141353,LOC103469718,LOC100701549,LOC106929229 coding upstream 855934 14246483 ~ 14248811 (-)
LOC120560090 NA non-coding downstream 59764 13326576 ~ 13327712 (-)
G61205 NA non-coding downstream 109843 13277193 ~ 13277633 (-)
G61195 NA non-coding downstream 202998 13182590 ~ 13184478 (-)
G61193 NA non-coding downstream 205157 13181587 ~ 13182319 (-)
G61161 NA non-coding downstream 380017 13007246 ~ 13007459 (-)
G61229 NA non-coding upstream 14898 13405447 ~ 13406754 (-)
LOC120560059 NA non-coding upstream 24520 13415069 ~ 13431734 (-)
G61243 NA non-coding upstream 173665 13564214 ~ 13564563 (-)
G61271 NA non-coding upstream 254843 13645392 ~ 13647321 (-)
G61273 NA non-coding upstream 279272 13669821 ~ 13670069 (-)
LOC120561038 LOC102778062,LOC101486272,LOC102199534,LOC108245630 other downstream 832191 12293707 ~ 12555285 (-)
LOC120561001 whrn,LOC102797690 other downstream 1325830 11901650 ~ 12061646 (-)
abca2 abca2 other downstream 1793816 11285385 ~ 11593660 (-)
G60715 NA other downstream 2197735 11189142 ~ 11189741 (-)
unc5db unc5d other downstream 2868509 10122152 ~ 10518967 (-)
G61264 NA other upstream 198490 13589039 ~ 13589332 (-)
si:ch73-138n13.1 LOC102794857,LOC107084631 other upstream 937602 14328151 ~ 14364326 (-)
trnaa-agc_14 NA other upstream 1548426 14938975 ~ 14939047 (-)
trnaa-agc_15 NA other upstream 1553947 14944496 ~ 14944568 (-)
trnae-cuc_15 NA other upstream 1558210 14948759 ~ 14948830 (-)

Expression


Co-expression Network