trnaw-cca_3


Basic Information

Item Value
gene id trnaw-cca_3
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8445618 ~ 8445689 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_245
GACTCTGTGGTGCAACGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCAAATCACGTCAGGGTca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_245 True 72 tRNA 0.54 1 8445618 8445689

Neighbor

gene id symbol gene type direction distance location
LOC120560868 NA coding upstream 43049 8331385 ~ 8402569 (+)
LOC120560867 NA coding upstream 56500 8387822 ~ 8389118 (+)
bicdl1 bicdl1 coding upstream 241432 8172560 ~ 8204186 (+)
LOC120560501 mtmr3,LOC103152423 coding upstream 362244 8078302 ~ 8083374 (+)
mtmr3 mtmr3 coding upstream 367450 8055365 ~ 8078168 (+)
LOC120560486 LOC107690107 coding downstream 19482 8465171 ~ 8482178 (+)
zgc:110329 LOC103366798,LOC104939353,LOC104956029 coding downstream 364865 8810554 ~ 8836973 (+)
slc4a5a slc4a5,LOC100703988,LOC101470466,LOC102293566,LOC102195261 coding downstream 416281 8861970 ~ 8907724 (+)
zgc:113436 LOC102776507 coding downstream 476594 8922283 ~ 8933253 (+)
LOC120560802 abcb9,LOC106965289 coding downstream 494140 8939829 ~ 8965106 (+)
trnaw-cca_2 NA non-coding upstream 1093 8444454 ~ 8444525 (+)
LOC120560008 NA non-coding upstream 8020 8434741 ~ 8437598 (+)
LOC120560009 NA non-coding upstream 14388 8428953 ~ 8431230 (+)
G60147 NA non-coding upstream 27768 8417642 ~ 8417850 (+)
G60120 NA non-coding upstream 73067 8372266 ~ 8372551 (+)
trnaw-cca_4 NA non-coding downstream 1091 8446780 ~ 8446851 (+)
trnaw-cca_5 NA non-coding downstream 2256 8447945 ~ 8448016 (+)
trnaw-cca_6 NA non-coding downstream 3455 8449144 ~ 8449215 (+)
trnaw-cca_7 NA non-coding downstream 5784 8451473 ~ 8451544 (+)
trnaw-cca_8 NA non-coding downstream 8110 8453799 ~ 8453870 (+)
LOC120560007 NA other upstream 10946 8431537 ~ 8434672 (+)
LOC120560006 NA other upstream 17873 8423189 ~ 8427745 (+)
cux2b cux2,LOC102795992 other upstream 394278 7947252 ~ 8051340 (+)
atp2a2a atp2a2,LOC102794349,LOC101476777,LOC102310403 other upstream 567247 7847671 ~ 7878371 (+)
zbtb26 LOC104940087,LOC100710858,LOC102306976,LOC102206222,LOC101473380,LOC102792103 other upstream 815438 7625736 ~ 7630180 (+)
vps37ba vps37b,vps37c,LOC102776795 other downstream 545752 8991441 ~ 9014903 (+)
ppp3cca LOC104934810,LOC100705072,LOC105915415,LOC101486266,LOC102777092,LOC103366803,LOC102200614,LOC101072650,LOC106932221 other downstream 572202 9017891 ~ 9055765 (+)
LOC120560959 golga7,LOC104937560,LOC106585131 other downstream 1481261 9926950 ~ 9981054 (+)
LOC120561142 NA other downstream 2280749 10726438 ~ 10746953 (+)
LOC120561144 NA other downstream 2302427 10748116 ~ 10752440 (+)

Expression


Co-expression Network