trnaw-cca_5


Basic Information

Item Value
gene id trnaw-cca_5
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8447945 ~ 8448016 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_247
GACTCTGTGGTGCAACGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCAAATCACGTCAGGGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_247 True 72 tRNA 0.54 1 8447945 8448016

Neighbor

gene id symbol gene type direction distance location
LOC120560868 NA coding upstream 45376 8331385 ~ 8402569 (+)
LOC120560867 NA coding upstream 58827 8387822 ~ 8389118 (+)
bicdl1 bicdl1 coding upstream 243759 8172560 ~ 8204186 (+)
LOC120560501 mtmr3,LOC103152423 coding upstream 364571 8078302 ~ 8083374 (+)
mtmr3 mtmr3 coding upstream 369777 8055365 ~ 8078168 (+)
LOC120560486 LOC107690107 coding downstream 17155 8465171 ~ 8482178 (+)
zgc:110329 LOC103366798,LOC104939353,LOC104956029 coding downstream 362538 8810554 ~ 8836973 (+)
slc4a5a slc4a5,LOC100703988,LOC101470466,LOC102293566,LOC102195261 coding downstream 413954 8861970 ~ 8907724 (+)
zgc:113436 LOC102776507 coding downstream 474267 8922283 ~ 8933253 (+)
LOC120560802 abcb9,LOC106965289 coding downstream 491813 8939829 ~ 8965106 (+)
trnaw-cca_4 NA non-coding upstream 1094 8446780 ~ 8446851 (+)
trnaw-cca_3 NA non-coding upstream 2256 8445618 ~ 8445689 (+)
trnaw-cca_2 NA non-coding upstream 3420 8444454 ~ 8444525 (+)
LOC120560008 NA non-coding upstream 10347 8434741 ~ 8437598 (+)
LOC120560009 NA non-coding upstream 16715 8428953 ~ 8431230 (+)
trnaw-cca_6 NA non-coding downstream 1128 8449144 ~ 8449215 (+)
trnaw-cca_7 NA non-coding downstream 3457 8451473 ~ 8451544 (+)
trnaw-cca_8 NA non-coding downstream 5783 8453799 ~ 8453870 (+)
G60174 NA non-coding downstream 30563 8478579 ~ 8478887 (+)
G60177 NA non-coding downstream 34879 8482895 ~ 8483122 (+)
LOC120560007 NA other upstream 13273 8431537 ~ 8434672 (+)
LOC120560006 NA other upstream 20200 8423189 ~ 8427745 (+)
cux2b cux2,LOC102795992 other upstream 396605 7947252 ~ 8051340 (+)
atp2a2a atp2a2,LOC102794349,LOC101476777,LOC102310403 other upstream 569574 7847671 ~ 7878371 (+)
zbtb26 LOC104940087,LOC100710858,LOC102306976,LOC102206222,LOC101473380,LOC102792103 other upstream 817765 7625736 ~ 7630180 (+)
vps37ba vps37b,vps37c,LOC102776795 other downstream 543425 8991441 ~ 9014903 (+)
ppp3cca LOC104934810,LOC100705072,LOC105915415,LOC101486266,LOC102777092,LOC103366803,LOC102200614,LOC101072650,LOC106932221 other downstream 569875 9017891 ~ 9055765 (+)
LOC120560959 golga7,LOC104937560,LOC106585131 other downstream 1478934 9926950 ~ 9981054 (+)
LOC120561142 NA other downstream 2278422 10726438 ~ 10746953 (+)
LOC120561144 NA other downstream 2300100 10748116 ~ 10752440 (+)

Expression


Co-expression Network