XLOC_005160 (ube2d1b)



Basic Information


Item Value
gene id XLOC_005160
gene name ube2d1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 7237666 ~ 7253270 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00009973
TCCGCACCGGAAGTGTGAGCTTGCTGAGCTACAGCTGTCTCTCTTTCTCGCCGCTCACATTCGCTTTTAACTCAGGGAAACACAGTATTGCTGAGCTGTTTCGTAGCAATAATATCGGACAGATACTAGAATCGGTAAATCTGGGGCGGTACACACAGTAAGGCAGCATGGCATTAAAGAGAATACAGAAGgaacttCAAGACTTGCAGAGGGATCCTCCAGCTCAGTGCTCTGCTGGACCAGTTGGTGATGACTtgTTTCACTGGCAAGCAACAATAATGGGACCTAGCGACAGCCCATACCAAGGAGGAGTCTTCTTTCTCACAATTCACTTTCCAACAGACTATCCTTTCAAGCCGCCAAAGGTAGCGTTTACAACAAAAATCTACCATCCCAACATTAACAGTAATGGAAGCATTTGCCTGGACATCCTGAGGTCGCAGTGGTCTCCAGCACTTACAGTTTCAAAAGTTCTTTTGTCCATATGTTCATTGCTTTGTGATCCAAATCCTGATGACCCCTTAGTCCCAGACATAGCACACATCTACAAATCAGACAAAGAAAAGTACAACAGACTAGCAAGAGAATGGACCCAGAAGTATGCAATGTGAAGACTTAATGGACATTTTTTTAAGTCACGAATCACTGTAAATTCTAGCATCTAAAAGTAAGATTAGGTTATATTATTAAACACATTGTACTGTTAACATTTACCATCTGAAATGACCAATAATAATAGCTGAACTAGTATTTTGAAGGGGACTGtgcactgcacaaaaaaaaaaaagacaataagcTTTTTATTGGTTTTGTGCATTTTGGTCATCCCCCGCAGTGGTGTTGGGCACTTTGTTTTCTTGTTTCATAAATCCTATTTAAGATTGGCATGATGTTATACAACTACAGTTACCCTACAAGTGGGCAATTAAGAAATTGAAAGCCGTTTTATTGTATCTTTCATTCAGTTgattacttttcttttcttttagatatttttattgtatAGTTATGAGCAACTATACTcaatctattttttcttttttttattttgcattaaaatttgtttaaaagtg
>TCONS_00009974
GCTGTCTCTCTTTCTCGCCGCTCACATTCGCTTTTAACTCAGGGAAACACAGTATTGCTGAGCTGTTTCGTAGCAATAATATCGGACAGATACTAGAATCGGTAAATCTGGGGCGGTACACACAGTAAGGCAGCATGGCATTAAAGAGAATACAGAAGgaacttCAAGACTTGCAGAGGGATCCTCCAGCTCAGTGCTCTGCTGGACCAGTTGGTGATGACTtgTTTCACTGGCAAGCAACAATAATGGGACCTGTAAGTATACTCGCCTCATTAGCCCTCAGCACTGTGCTTTGCTCTTAAATACTTGCCATGATGGTGATTAAGTGAATTCCTAATTGGCTAAGGAAATACGCAACTTTAAAtcttaaaagaaatattttttggcACTTTTTGAATGATCATTTTTGACTTAAAATTTGCAaggaaaaaatgaaataaacgcACTAAGTTCTACTGtgtaattaaagtaaataaaaatttaaatgtaacgtGTAACTGTAAAATGACTCTAGTAACATTCTTATTCTCCTTTTAACCATTCTTTTATAGATTTGTTATATCTTTGTAGAAAATATGAATTGAATATAAAGAAAAAAGGATTTTAGAAACATTCTTATTATCTTTTAACCATTTTGTTATAGATTTAAATATCTTTGTAGAAAAGATGCATG
>TCONS_00009975
GCTCACATTCGCTTTTAACTCAGGGAAACACAGTATTGCTGAGCTGTTTCGTAGCAATAATATCGGACAGATACTAGAATCGGTAAATCTGGGGCGGTACACACAGTAAGGCAGCATGGCATTAAAGAGAATACAGAAGgaacttCAAGACTTGCAGAGGGATCCTCCAGCTCAGTGCTCTGCTGGACCAGTTGGTGATGACTGTAAGTTCATTTTATTGATTAGTTTTTAATACATTACAAGATCTGACGCATTGGGCAAATTTGTGTAAttctcttcttttgtttttagtgTTTCACTGGCAAGCAACAATAATGGGACCTGTAAGTATACTCGCCTCATTAGCCCTCAGCACTGTGCTTTGCTCTTAAATACTTGCCATGATGGTGATTAAGTGAATTCCTAATTGGCTAAGGAAATACGCAACTTTAAAtcttaaaagaaatattttttggcACTTTTTGAATGATCATTTTTGACTTAAAATTTGCAaggaaaaaatgaaataaacgcACTAAGTTCTACTGtgtaattaaagtaaataaaaatttaaatgtaacgtGTAACTGTAAAATGACTCTAGTAACATTCTTATTCTCCTTTTAACCATTCTTTTATAGATTTGTTATATCTTTGTAGAAAATATGAATTGAATATAAAGAAAAAAGGATTTTAGAAACATTCTTATTATCTTTTAACCATTTTGTTATAGATTTAAATATCTTT

Function


symbol description
ube2d1b Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in positive regulation of protein ubiquitination; protein K48-linked ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human UBE2D1 (ubiquitin conjugating enzyme E2 D1).

GO:

id name namespace
GO:0031398 positive regulation of protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0031625 ubiquitin protein ligase binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0061631 ubiquitin conjugating enzyme activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2735 Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in positive regulation of protein ubiquitination; protein K48-linked ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human UBE2D1 (ubiquitin conjugating enzyme E2 D1).

Ensembl:

ensembl_id ENSDARG00000038576

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00009973 False 1073 mRNA 0.38 7 7237666 7253270
TCONS_00009974 False 673 lncRNA 0.34 3 7247724 7253237
TCONS_00009975 True 726 lncRNA 0.33 2 7247740 7253218

Neighbor


gene id symbol gene type direction distance location
XLOC_005159 ipmkb coding downstream 2563 7193779 ~ 7235103 (-)
XLOC_005158 si:dkey-187i8.2 coding downstream 80139 7149448 ~ 7157527 (-)
XLOC_005157 NA coding downstream 94836 7142467 ~ 7142830 (-)
XLOC_005156 NA coding downstream 154293 7070639 ~ 7083373 (-)
XLOC_005155 NA coding downstream 192972 7017519 ~ 7044694 (-)
XLOC_005161 zgc:171971 coding upstream 15122 7268392 ~ 7280551 (-)
XLOC_005162 NA coding upstream 50295 7303565 ~ 7322951 (-)
XLOC_005163 NA coding upstream 152818 7406088 ~ 7441307 (-)
XLOC_005164 FP102277.1 coding upstream 249692 7502962 ~ 7503098 (-)
XLOC_005165 slc16a9b coding upstream 335923 7589193 ~ 7607114 (-)
XLOC_005151 NA non-coding downstream 744574 6306823 ~ 6493092 (-)
XLOC_005170 NA non-coding upstream 750239 8003509 ~ 8073263 (-)
XLOC_005171 NA non-coding upstream 786714 8039984 ~ 8046473 (-)

Expression



Co-expression Network