XLOC_005161 (zgc:171971)


Basic Information

Item Value
gene id XLOC_005161
gene name zgc:171971
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 7268392 ~ 7280551 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009976
ACCAATGATGCTCCTGCAAGGATGTAGCTGTCAGCTGGAAGAGTTCGGCAGATATGATGTGAGCAGTTTACACAAATTTCAAGATGTGTGATCATGGAGATGGGGACGCAGAGGCGAGCTCATCTTCCACTTTCAGACCGTCTTTTGCTCTGGGCAACGTTAAAGGACTGCCAGGGAGAATTTCACACAATCCTCCTCCACCAGGCAGACTGACCTCCCTGCGGTCCAGAGACCTGACCCTGGGAGGATTTAAAAAGAAAACCTTTGTTCCAAATGTTCACTCCGTTCGCAAAAGTAAAGATGAGTTACAGGAGGAGCCTCACAGTGCaccaaaaaaagagagaagagaCAGGGAagacagacacagagagagacgACAGCGACGAGAAAAGCCTCAGACCATTCAGTCTCACTCTATCTTTGAGCAGGGCCCTGCTGACACCTATAGGAAACTAGGTAATTGGGGCAGCTCTAACCTAACTGCTTGTGATCCTGCACTGGtcacaaaatgcattaaaaaggaAAAGAACAACACAGAGGACGACGACAATGCAATTTTACAAAAACTCACACGAGACGATTTTTTGGATGATCCTGGACTGAAAAACGACCCCAAGCAAAGACCAATCAGACTTCCACTCCATCAGTCATGCAACTTTTTGTCAACGGATGCAGCTAGTTCATTTAAAGAAGAAACTACGTCTGATAATCCAAGACATTCACCAAGAGTTGAGCAGAAATACCCGCAGACATCGAGGAGCTCATCTGCAGGTCCAGAACAGCCAACAGTCGGAGAACTTTTCCAGCAGCTCAGCGTTTCAGATAAAGAAGAGCTGCTGTTTATTCAGCTTCCAGATACCATACCTGGTCAACCTAAAACCTCCAGCCCAGAGAAAACCAGAAAGGATTGCAAGGCAGAAGAGAAGCGTACAGCGCATATTAAAGCTATAGACAAGCCTGATAAAAGCACCGTTCCTGTATTGTCTGACTTCTCAGAGGGTCTGATTGGAAAACTGCAAATCAGAAAGTCTGGTAAAGTCCAGTTGGTCATGGGAAATGTTACATTAGACGTCTCAGAGGGAGCAGCCTTCTCTTTCCTGCAGCAActggtgtgtgtgcgtctgtcGGAGGGCCTTACCGGGGACATGACCGTGCTCGGAAACATCACACACAAGCTGGTGTGTTCGCCCGACTTTGAGACTTTACTGCAAGAAGCCAAAATAGCGTCGGATTCTCGCTCTGTTTCTAAGTCCTGATTTGATCACTCAGGCATATTTAAACTAATGATGTAAATAactgtttttataatgttttatttgtgaAGTTAAGTGTCCTGAGAGTTACACTATAAGCTAATATTTGCCATTTGATGGggtaaacgttttttttttttctttctaggtTTTTACTCAGCAAGGTTGAATTTATTgaacaaaatacagtaaaaacaatattGTTAAGTTTCATTACAGTAAAACATTTTTCTAGTTGGTTATAACCATCATGAATATCATTATATAGGCCAAAAGCTAAGGATTTTTTAATGGCCAGCATAGAAGAAAACTTACTTGCACCATCAAGAAACAAATTCTAATTTGCAATTTGTGTAGCTTTAGAGAAAAATGAAGACTtgcttaaaataatttattaattaattaagaccTTCAAGACTAATATTCCAGTAAATTTAGGACTTTAAGACTTTAAatttacttatttgaaatgtaagactttaagacccagcggacaccctgtagttattctaaaattaaaattattcatatgatggtaaagctgaattttcagaatTTTAACAGTGGTCAGATCATAAAGTgctgattaaatattaaattatacgTTTTCAATGTTGAAAATAGGCTTtgcatatttttgtggaaacaaaattcaaattcaaaaataattcaataatacaAGGTATTCATATTTTACACCTAGTTGAATCAATATTTGTTTGCGATTAATGCTTTATAGAATGAATGCAATAAACTAATT

Function

symbol description
zgc:171971 Predicted to enable DNA binding activity and DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription by RNA polymerase III. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex.

GO:

id name namespace
GO:0006383 transcription by RNA polymerase III biological_process
GO:0005666 RNA polymerase III complex cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070928-37 Predicted to enable DNA binding activity and DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription by RNA polymerase III. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex.

Ensembl:

ensembl_id ENSDARG00000042054

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009976 True 2013 mRNA 0.39 9 7268392 7280551

Neighbor

gene id symbol gene type direction distance location
XLOC_005160 ube2d1b coding downstream 15122 7237666 ~ 7253270 (-)
XLOC_005159 ipmkb coding downstream 33289 7193779 ~ 7235103 (-)
XLOC_005158 si:dkey-187i8.2 coding downstream 110865 7149448 ~ 7157527 (-)
XLOC_005157 NA coding downstream 125562 7142467 ~ 7142830 (-)
XLOC_005156 NA coding downstream 185019 7070639 ~ 7083373 (-)
XLOC_005162 NA coding upstream 23014 7303565 ~ 7322951 (-)
XLOC_005163 NA coding upstream 125537 7406088 ~ 7441307 (-)
XLOC_005164 FP102277.1 coding upstream 222411 7502962 ~ 7503098 (-)
XLOC_005165 slc16a9b coding upstream 308642 7589193 ~ 7607114 (-)
XLOC_005166 ccdc6b coding upstream 329377 7609928 ~ 7639120 (-)
XLOC_005155 NA non-coding downstream 223698 7017519 ~ 7044694 (-)
XLOC_005151 NA non-coding downstream 775300 6306823 ~ 6493092 (-)
XLOC_005170 NA non-coding upstream 722958 8003509 ~ 8073263 (-)
XLOC_005171 NA non-coding upstream 759433 8039984 ~ 8046473 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_01814588_01822344 NA coding CI01000047 null 1814488 ~ 1822935 (+)