XLOC_005162


Basic Information

Item Value
gene id XLOC_005162
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 7303565 ~ 7322951 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011094
CAGCTGATCGCTTATCTCCATGTGGATGGCtgtttcccgctgttaccagtttgcttgCTTCatacatcggcggacttgagacgaaGAGTGGAGCTGACTGCAACGACAGGGTTGCAGTCTggagaagaacggttccagaaagcagagcagaTTGACTGAAAATTGCTCAAACCACAGGCACCGGCTGAATCAGCCCTGCTTTACCGCTAAGACTTGCTATCTAGAGGCAGTGGATAAAGCCCTGAAGACACAACGTGAACTTTACAGAGTTAACTGCATTCAAAGAGAAAACagaattactcttttttttttttttttttttttttctgtgatcgGCCAAGAAACAAACCCCAAACAGGATCTAATGGATTTATGAGACTGTGGAAAGGCCTCGGGGAAACTTTTCATAAACACCCATAACCTTCTTAAAAATGACGAACAGATTTTTGACCATTTAACTCCAAGTCGAATGAAACACGTGATGTTTTGGCCGATGACAAGGGTGGTCTCAACCTCATGCTCCTGGACGCCTACAGTTTGTTTTCTCACCGTTTGATACTTATTGCACAAGACACTGGAAAACACTTGTGGAAATCAGGAAGTCCAATCAGACCTCTCCAATGCTATGCAACTTGTGCAGTTTTTTATCACAAAATTCTGAAAATTTTTgccaaaatacttttttaaagtgaGATGAAACAACACAGCTTTTGAGTTCTTTTaaggaaaacttaattgttttatgttcaatcaacttaaaattgtaaaaaccactaagttaacttaatcaatttgctTTGAGGCGAGAGAAAGATATTGTGTAggcatttttttacaatgtgtttAAATTTGCTAGATCAAATGAAGtggactttatttttatttagtgatttatacaatacagacatttttaatgcatatttagagTAATAAACTGGAAAATAGCAGAATCAGAAATGTTATTAAATCCCAGACCAATTGAAATGATGCAGTAAAGAAGCTCTACAGCTTAATAAACTCAAGTTGATTatgttaattcagttcagttcaattacTGCAACAAAAAAGTGATGAAGAAGTTCAGTCCAATCACTACTAATCTGCCTGGTGTTAAGATGCAATTTGTGTCTGATACAAAACACATATCCATTTTACATCAGTTGTTTGAATATGTCTCTTTTACTCTgtttacagataaaaaaaatattaaattcaggACTTTTTATCGtcacttaatattaaatttaaaaccaAATGTGATGGAAATAAAc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011094 True 1271 lncRNA 0.36 2 7303565 7322951

Neighbor

gene id symbol gene type direction distance location
XLOC_005161 zgc:171971 coding downstream 23014 7268392 ~ 7280551 (-)
XLOC_005160 ube2d1b coding downstream 50295 7237666 ~ 7253270 (-)
XLOC_005159 ipmkb coding downstream 68462 7193779 ~ 7235103 (-)
XLOC_005158 si:dkey-187i8.2 coding downstream 146038 7149448 ~ 7157527 (-)
XLOC_005157 NA coding downstream 160735 7142467 ~ 7142830 (-)
XLOC_005163 NA coding upstream 83137 7406088 ~ 7441307 (-)
XLOC_005164 FP102277.1 coding upstream 180011 7502962 ~ 7503098 (-)
XLOC_005165 slc16a9b coding upstream 266242 7589193 ~ 7607114 (-)
XLOC_005166 ccdc6b coding upstream 286977 7609928 ~ 7639120 (-)
XLOC_005167 ank3b coding upstream 330912 7653863 ~ 7655322 (-)
XLOC_005156 NA non-coding downstream 220192 7070639 ~ 7083373 (-)
XLOC_005155 NA non-coding downstream 258871 7017519 ~ 7044694 (-)
XLOC_005151 NA non-coding downstream 810473 6306823 ~ 6493092 (-)
XLOC_005170 NA non-coding upstream 680558 8003509 ~ 8073263 (-)
XLOC_005171 NA non-coding upstream 717033 8039984 ~ 8046473 (-)
XLOC_005173 NA non-coding upstream 1065379 8388330 ~ 8394645 (-)
XLOC_005152 NA non-coding downstream 939985 6348703 ~ 6363580 (-)

Expression


Co-expression Network