XLOC_005167 (ank3b)


Basic Information

Item Value
gene id XLOC_005167
gene name ank3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 7653863 ~ 7655322 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009980
aTTCAAACTCTTTTCTGATCAATGTCCCTCAACCTATTATAATGATATGGACTctttttgtttgttgctgtccAATTATTTCAAAATCTCCCCAAGACTTTTAATACTCTTTGCTTGATCAGAAAAGGGTAGTGTGCTTTAATGCTTTTCAAACTACTCTAACTAATATTAAGCTTTAAAAGGTTTTCATGGCTTTTCCTTTTCTGCTCTCAGGCCCTCAGACCCCCTGTGAAAGAACAGATTTGCGAATGGCTATTGTAGCAGATCATCTCGGCCTGAGTTGGACTGAGATGGCCAGGGAAATGGAATTTTCAGTTGATGAGATAAATCAAATCCGTGTGGAAAACCCCAACTCATTGACGGCTCAGAGTTTCATGCTATTAAAGAAATGGGTTAACAGAGATGGTAAAAACGCTACAACGGATGCCTTAGCTGCGGTCCTGACTAAGATCAATCGGTTGGATATTGTGACATTGCTGGAAGGGCCGATATTTGACTATGGTAACATTTCAGGCACAAGATGTTTTGCAGATGATAGCGCAGTTTCCCAGGAGCAGGCTGATGGTAAAGTTTAGCCCCATCTACCTGAACTCTGCTTCTCTATGTTTCTCACAAATCTGTAGATTCATAGAACCATCATGGCAAAACACTCTAAATTCAAATCCAGTGTAAACTTAAACTCAAGTTTAAGTTTAAATCTCAATCTTACTTTCTAATCGATTAGATTCGCCAATTATGAGCACTGTTCTTTTCCAGCCTGGTGTTGGACCAGTCAGGGATCAGTGTGATCATATATATTGATTTAGtatgattgtgtgtttgtatgaaaGCATTAAAGCATGCTGCTATAAAGTACATAAGCTAATGCTGAATCAGAACTTAATCCCATCTCAGAAGTGCATATCACATTAGAGACCATACTGCTCTATTACCCATTCATATGAGGTCACTAAATGCACTTGCTTAAtacatacatttgt

Function

symbol description
ank3b Predicted to act upstream of or within signal transduction. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human ANK3 (ankyrin 3).

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-060621-2 Predicted to act upstream of or within signal transduction. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human ANK3 (ankyrin 3).

Ensembl:

ensembl_id ENSDARG00000110151

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009980 True 980 mRNA 0.38 3 7653863 7655322

Neighbor

gene id symbol gene type direction distance location
XLOC_005166 ccdc6b coding downstream 14743 7609928 ~ 7639120 (-)
XLOC_005165 slc16a9b coding downstream 46749 7589193 ~ 7607114 (-)
XLOC_005164 FP102277.1 coding downstream 150765 7502962 ~ 7503098 (-)
XLOC_005163 NA coding downstream 212556 7406088 ~ 7441307 (-)
XLOC_005162 NA coding downstream 330912 7303565 ~ 7322951 (-)
XLOC_005168 CABZ01050062.1 coding upstream 44310 7699632 ~ 7710563 (-)
XLOC_005169 ank3b coding upstream 102341 7757663 ~ 7854216 (-)
XLOC_005170 NA coding upstream 348187 8003509 ~ 8073263 (-)
XLOC_005171 NA coding upstream 384662 8039984 ~ 8046473 (-)
XLOC_005172 tmem26b coding upstream 408707 8064029 ~ 8070969 (-)
XLOC_005157 NA non-coding downstream 511033 7142467 ~ 7142830 (-)
XLOC_005156 NA non-coding downstream 570490 7070639 ~ 7083373 (-)
XLOC_005173 NA non-coding upstream 733008 8388330 ~ 8394645 (-)
XLOC_005174 CR354434.1 non-coding upstream 788582 8443904 ~ 8444021 (-)
XLOC_005175 NA non-coding upstream 822137 8477459 ~ 8480708 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_01558151_01580512 ANK3B, ANK3 coding CI01000047 null 1558151 ~ 1580615 (+)
tiger barb (Puntius tetrazona) G84866 ank3,LOC107746453,LOC107654059 unknown NC_056710.1 CM032079.1 1820519 ~ 1831991 (+)