XLOC_005173


Basic Information

Item Value
gene id XLOC_005173
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 8388330 ~ 8394645 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011098
CTTTTGtatcttaaaggtgctgtatgtaagttttagACTCTACTAAAGCTTAAAAGTACCATAATATGATTGGggatatttaagaaatatgctaAGTGAactttcttgtttatctgaaaaacaatgctgaagtcagatattctgctttgaaaatgtgcgttacatgCCAGAacctctgtctttgttttggtccctttaacccgcccaatgtcactttagccaattatatttcagcacactGGTTTGCCTTGGTTGAAAactgcatatttcattcattcagtcatgaaggctctcaaagtatgtttccgtgaccaaaatgtgacctccagtggacagtagcagcctctgaaatgagacgcagattcagagttccacatgaggtggttattagtaagcaaataatataaaaagggctttacattaacacccaccaaatgcgggtagatttgtTGCTTCATGGTGAGCTTGCTCTCCTaaaatatttaatagtaaatGTTGCAAATAGTTTTACTGCGCCATGGTCAACTTGACTATTTAATCCCATGACTCTTTTGTGAAGCGAAGCCTAGCTGTGGGACAAGAAAACTGTTACAGTGGAATCTATTAAAACACTTTGGAGTAAAGTAAACTATACACAGGATAATTTGGTCAACTGCTGCTATATTAAACAGCATGCTATATATACATACCATGTGGTAAAACACAGCGGCTTTAAATGGACCATGGTTTGACCTTCCAGCAAGAAGGCGAAACTGCATTCCTGCAGCAGCTAAAAGATTTAGGCCAGATTTCTGAAGTCTGAACAGTCAAGTTTGAACTCTGACCTCCAAAGCGCAGCTGGCTGTGACAATCTTACACTGAAAGAGACACTTTAAGTGCTCTTGACAAACAGTCTAATTACGGGGCCGCAAAATTCCCAGCGCTCATTACAATTATAATGAACAGGGTAAACTAGAGCAGATGTGTCCTACTGCAGTGCCTTTCAATGTGAGTCTGAGTACTGTACCAAAGCAAGAGTTTCTGCATGGCTGCTCTAAGGATAAACTGGAGCGCAGTGCTTTTGTCCGTATGTGAAAAACATAAATGCTGAAAACATACAATGAAAAAagctaaattacttttaaaagtaatctaaaagtaatttgAACATAGAATAAAGAGTACATTAGTCATTAGATTGTTACAGACAACAATTAAGGATTTATAACATTTAAGTGTGCTTGCACTGAATACGGCTCCTGTTTAGTCCATCTTCCCTACCAGTGCTAGGTGTAATTAGATACAAAgtaattcattcatgcattttcctttggcttagtcccttgtttatcagcagaatgaaccgccaactattccggcatgtttttcacagcggatgcgcttccagctgcaagcccAGCGCTGGGAAACACTAatacactctcccattcacactcaaataatattttattttaccaattCATTCATACTGCATTTATACTGTGAGGCGACTGTACTAACCAGTGAGCCACCTACAACTAGttacaataattaaattacttttctgctAAAAAGTAAAGCAAGGGACCATTTTTTGGTCCTTT

Function

GO:

id name namespace
GO:0072698 protein localization to microtubule cytoskeleton biological_process
GO:0044380 protein localization to cytoskeleton biological_process

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011098 True 1583 lncRNA 0.38 2 8388330 8394645

Neighbor

gene id symbol gene type direction distance location
XLOC_005170 NA coding downstream 315067 8003509 ~ 8073263 (-)
XLOC_005172 tmem26b coding downstream 317361 8064029 ~ 8070969 (-)
XLOC_005171 NA coding downstream 341857 8039984 ~ 8046473 (-)
XLOC_005169 ank3b coding downstream 534114 7757663 ~ 7854216 (-)
XLOC_005168 CABZ01050062.1 coding downstream 677767 7699632 ~ 7710563 (-)
XLOC_005174 CR354434.1 coding upstream 49259 8443904 ~ 8444021 (-)
XLOC_005175 NA coding upstream 82814 8477459 ~ 8480708 (-)
XLOC_005176 egr2b coding upstream 89193 8483838 ~ 8504278 (-)
XLOC_005177 CR932364.1 coding upstream 114995 8509640 ~ 8511185 (-)
XLOC_005178 NA coding upstream 179288 8573933 ~ 8575025 (-)
XLOC_005164 FP102277.1 non-coding downstream 885232 7502962 ~ 7503098 (-)
XLOC_005163 NA non-coding downstream 947023 7406088 ~ 7441307 (-)
XLOC_005162 NA non-coding downstream 1065379 7303565 ~ 7322951 (-)
XLOC_005180 CR354554.1 non-coding upstream 465548 8860193 ~ 8860307 (-)
XLOC_005184 CR854953.1 non-coding upstream 722407 9117052 ~ 9117178 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110501068 LOC106575995 misc NC_048585.1 CM023239.2 34269811 ~ 34288000 (-)