Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_005181 |
| gene name | cyp26a1 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 8954761 ~ 8958353 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| cyp26a1 | Enables retinoic acid 4-hydroxylase activity. Acts upstream of or within several processes, including animal organ development; cellular response to vitamin A; and retinoid metabolic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in several structures, including head; mesoderm; neural plate; pleuroperitoneal region; and presumptive neural plate. Used to study holoprosencephaly. Orthologous to human CYP26A1 (cytochrome P450 family 26 subfamily A member 1). |
| id | name | namespace |
|---|---|---|
| GO:0090242 | retinoic acid receptor signaling pathway involved in somitogenesis | biological_process |
| GO:0021797 | forebrain anterior/posterior pattern specification | biological_process |
| GO:0071299 | cellular response to vitamin A | biological_process |
| GO:0007507 | heart development | biological_process |
| GO:0001756 | somitogenesis | biological_process |
| GO:0003131 | mesodermal-endodermal cell signaling | biological_process |
| GO:0016125 | sterol metabolic process | biological_process |
| GO:0003151 | outflow tract morphogenesis | biological_process |
| GO:0031016 | pancreas development | biological_process |
| GO:0055014 | atrial cardiac muscle cell development | biological_process |
| GO:0048854 | brain morphogenesis | biological_process |
| GO:0021661 | rhombomere 4 morphogenesis | biological_process |
| GO:0001568 | blood vessel development | biological_process |
| GO:0042573 | retinoic acid metabolic process | biological_process |
| GO:0042574 | retinal metabolic process | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0034653 | retinoic acid catabolic process | biological_process |
| GO:0030902 | hindbrain development | biological_process |
| GO:0001944 | vasculature development | biological_process |
| GO:0030917 | midbrain-hindbrain boundary development | biological_process |
| GO:0034672 | anterior/posterior pattern specification involved in pronephros development | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0008401 | retinoic acid 4-hydroxylase activity | molecular_function |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | molecular_function |
| GO:0004497 | monooxygenase activity | molecular_function |
| GO:0005506 | iron ion binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0020037 | heme binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-990415-44 | Enables retinoic acid 4-hydroxylase activity. Acts upstream of or within several processes, including animal organ development; cellular response to vitamin A; and retinoid metabolic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in several structures, including head; mesoderm; neural plate; pleuroperitoneal region; and presumptive neural plate. Used to study holoprosencephaly. Orthologous to human CYP26A1 (cytochrome P450 family 26 subfamily A member 1). |
| ensembl_id | ENSDARG00000033999 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00009997 | False | 1830 | mRNA | 0.45 | 7 | 8954761 | 8958353 |
| TCONS_00009998 | True | 835 | mRNA | 0.47 | 4 | 8956399 | 8958011 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_005180 | CR354554.1 | coding | downstream | 94454 | 8860193 ~ 8860307 (-) |
| XLOC_005179 | jmjd1cb | coding | downstream | 136762 | 8581875 ~ 8817999 (-) |
| XLOC_005178 | NA | coding | downstream | 379736 | 8573933 ~ 8575025 (-) |
| XLOC_005177 | CR932364.1 | coding | downstream | 443576 | 8509640 ~ 8511185 (-) |
| XLOC_005176 | egr2b | coding | downstream | 450483 | 8483838 ~ 8504278 (-) |
| XLOC_005182 | exoc6 | coding | upstream | 9922 | 8968275 ~ 9087566 (-) |
| XLOC_005183 | adam8b | coding | upstream | 138610 | 9096963 ~ 9132682 (-) |
| XLOC_005184 | CR854953.1 | coding | upstream | 158699 | 9117052 ~ 9117178 (-) |
| XLOC_005185 | NA | coding | upstream | 269033 | 9227386 ~ 9237794 (-) |
| XLOC_005186 | pth3r | coding | upstream | 299104 | 9257457 ~ 9294819 (-) |
| XLOC_005175 | NA | non-coding | downstream | 474053 | 8477459 ~ 8480708 (-) |
| XLOC_005174 | CR354434.1 | non-coding | downstream | 510740 | 8443904 ~ 8444021 (-) |
| XLOC_005173 | NA | non-coding | downstream | 560116 | 8388330 ~ 8394645 (-) |
| XLOC_005187 | CR457459.1 | non-coding | upstream | 387011 | 9345364 ~ 9345485 (-) |
| XLOC_005195 | AL732629.1 | non-coding | upstream | 689875 | 9648228 ~ 9648345 (-) |
| XLOC_005196 | AL732629.2 | non-coding | upstream | 711574 | 9669927 ~ 9671137 (-) |
