XLOC_005190 (si:ch211-207i20.2)


Basic Information

Item Value
gene id XLOC_005190
gene name si:ch211-207i20.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 9482875 ~ 9498060 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010013
ACTTTTATTATGTATTCTAGAACCCGGATTGTAAATGTCAGCCGCTGTTTTACTTCCGTTTATTACAACCTAAAGTTGTTTGTCATTCTTTGCTCACTTTTCGACTCCACAATTGAGAATCGAGGGCAATGTTAGCTACTTAACTAAACTCGCGACTTCCAGTAGTGTGATATTTGGTTTTGACAGGATGTCTCGCTGCGTCGCGTTACAGACGCATCTGGCGTCCGTGATTGAGGCTCTAGTTCACGCCGCGATCGCTGAAATGTGCAAACTTACGGATGTGGAGGCTCTGTCGGGTCTCACAAGCGATGCTTCAAAAGATCAGCGTAAATACACAGAGACCGAGGCGAGAATGAAGACGGAAAAGGAGGAGAAAATGAAGCGGTTTGCATCTGTTATGGAAGTATTGGGCAATGAAGCTCTAGGGAAAATAATAAAGCTCGTGGATGAATCCAAATTACTGTTGAATCTGGAGTGCAAAACGTTTTCAGGCAAAAGGGCAAAGCGGCCAGGCTGCATCTTGAACATTCTGTCTGCTGGTGGACTGGaagaggAACATTCTTATGATGGAAGCGCAAGAAGCCTGGAAATGAAAACTGATCATGAGTCTGTTGCGGTCACAGAGGACCGTCCAGAATCACCAGTGGTTTTGGCAGTGACGATCAGAGATGAATTTGGAAAAGTTGATTTGAAGTCCATCACTGCTGGTCACTTAAGCAATACTTCAGAAGATGGAGTAGCATCTGTTTTGCCAGAAGACGGCAGTGAACTCCCACAAGAAGCTGTTGCTTTATTTGGAAAGAGATCCTTTATTTGTTGCGACTGTGGAAAGAGCTTCTCTTCTCATAGCAACCTCAAATCCCACCAGCGCATTCACACCGGAGAAAAGCCCTTCGGCTGTGGCCTCTGCGGCAAGGCTTTCGCTCACAAACAAAGTCTCTCCGATCACCAACGAGTCCACTCAGGAGAAAAGCCGTTTGTTTGTAAAATCTGCGACAAATCCTTTGGTAAAGCGGCGCATCTGAAAACCCACGAAATCATCCACACCGGCGAAAAACCTTTTGCCTGCAACGTCTGCGGAAAGAGATTCAACATCGCTCAAAATCTGTCCAGACACCAACTCACACACACCGGCGAAAAGGAGTTCAAATGTTCAGTGTGTCAGAAAAGCTTCACACGGGCCGTAACGCTCAAAACGCATCAGCTCATCCACACAGGACAGAAACCGTACTCCTGCGTGTCTTGCGGGAAGGCTTTCCGTCACGCGGTTAACCTGAGAAACCACGAGCGCATCCACACAGGCCTGCGACCGTTCAGTTGTGACTTGTGCGGCAAGACTTTCCGCCAGGCTGTCAATCTGAAAATCCACAAACGAATTCACACGGGGGAaaagcctttcagctgtaagGAGTGCGGGAAGAGCTTCAGTCAGCAGAGCAGTCTCATTACACACAGCCGCACTCACTCCGGAGAAAAACCCTTTGGCTGCAATTACTGCGATAAGTGGTTTAACAATTCAAACAGCCTGAAGCTGCACCAGAGAGTGCACACCGGCGAGAAACCTTACTACTGTGAGCAATGCGACAAGTATTTCAGTCAGGGAAGTCACCTGCGTACTCACAAACGCCACATTCATGGAGGAGGGAAGCAGTACATATGCGATAAATGTGGGAAGAGGTATGCGGATCCTCGAAACCTTAAACTGCATAAATGCTTTTATGCTTAATCATGGTGTGGAGGACATTCGTCACTGTAGTAGAATTCTGAGCACATTTCTTTCTGTGAAATAAACCATATGGTGGATGAAA

Function

symbol description
si:ch211-207i20.2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-299 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

Ensembl:

ensembl_id ENSDARG00000099986

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010013 True 1808 mRNA 0.47 5 9482875 9498060

Neighbor

gene id symbol gene type direction distance location
XLOC_005189 pgap3 coding downstream 14257 9449665 ~ 9468618 (-)
XLOC_005188 erbb2 coding downstream 44648 9360316 ~ 9438227 (-)
XLOC_005187 CR457459.1 coding downstream 137390 9345364 ~ 9345485 (-)
XLOC_005186 pth3r coding downstream 188056 9257457 ~ 9294819 (-)
XLOC_005185 NA coding downstream 245081 9227386 ~ 9237794 (-)
XLOC_005191 si:ch211-207i20.3 coding upstream 12417 9510477 ~ 9516981 (-)
XLOC_005192 nudt13 coding upstream 21190 9519250 ~ 9538578 (-)
XLOC_005193 arg1 coding upstream 99091 9597151 ~ 9617770 (-)
XLOC_005194 heatr1 coding upstream 121849 9619909 ~ 9700605 (-)
XLOC_005195 AL732629.1 coding upstream 150168 9648228 ~ 9648345 (-)
XLOC_005184 CR854953.1 non-coding downstream 365697 9117052 ~ 9117178 (-)
XLOC_005180 CR354554.1 non-coding downstream 622568 8860193 ~ 8860307 (-)
XLOC_005178 NA non-coding downstream 907850 8573933 ~ 8575025 (-)
XLOC_005196 AL732629.2 non-coding upstream 171867 9669927 ~ 9671137 (-)
XLOC_005199 BX928755.1 non-coding upstream 562576 10060636 ~ 10063668 (-)
XLOC_005200 NA non-coding upstream 626600 10124660 ~ 10129902 (-)
XLOC_005214 NA non-coding upstream 1271071 10769131 ~ 10772946 (-)

Expression


Co-expression Network