XLOC_005191 (si:ch211-207i20.3)


Basic Information

Item Value
gene id XLOC_005191
gene name si:ch211-207i20.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 9510477 ~ 9516981 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010014
ATGGCGCCGATTCACAAACCCACTCACTATTCAGTCAGAAGAAGTATGGTAGTCAAGATGGACGCtgagctgttgttgtttttggtttCTGAGAACAAGGAACTGTTTGATAAGAACCACAGCGAGTACAAAAACACGAAACGGAAAGAAGCGCTCTGGCAAGGAATAGCAGACAAAATGGGAGTCGACGTGGAAGAGGTGAAAGCTAAATGGAAAAACCTCAGAGACACATACACCAGGAAAAAGCGACTGGAGCAGGACGGCAGTCGTAGTGGACGAGCTGCTAAGAAAAAGAAGCAATGGAAATATATGCGAGTGATGGACTTTCTCGACCCCGCCACAGAACACAGAAGTGGTATTCTGGACAGCAAAATCGAGGATGACGAGCCAGATGAAGACAGCGGGGCGGAACCAGCCAGCACCAGTACAGGGACGTCTGTGACCAGTCCAGAAGCGATGAGATCCAGCATTGTAAAGCGGAGGAGATCAGAGACACTTGAGCTATTGGAGAAATATCTGGCAACTAAAGATGCAAAGGACAGAGAGAAAGACGAACAACAGCAAGACGAAGTCGATTTATTCCTGCGGAGTTTAGCACCTGCATTAAGACGCTTGCCTGCTTCAAAACAATCCTTGGTGAAGCTTCAAATCCAAAAAATACTTCATGACGCAGAGTTCGGACAGCCCAGCTTTCCACAGATATCTTCAGTGTCGCCAAGTAATCAGTTGTTACTACAGTGTAGTGTTGTAAAACCCAGttgaaatgctttttttattcagaaaaataaatatgtcTTTAAAA
>TCONS_00010015
ATGGCGCCGATTCACAAACCCACTCACTATTCAGTCAGAAGAAGTATGGTAGTCAAGATGGACGCtgagctgttgttgtttttggtttCTGAGAACAAGGAACTGTTTGATAAGAACCACAGCGAGTACAAAAACACGAAACGGAAAGAAGCGCTCTGGCAAGGAATAGCAGACAAAATGGGAGTCGACGGTGAGTTTTGTTTTGCTGCAGCTTGTTGTGTAGCGGTGCAGGCAGCGCGCTAAAACACCATCATCACCAAacgtttgtgcgtttgtttgtgtaGTGGAAGAGGTGAAAGCTAAATGGAAAAACCTCAGAGACACATACACCAGGAAAAAGCGACTGGAGCAGGACGGCAGTCGTAGTGGACGAGCTGCTAAGAAAAAGAAGCAATGGAAATATATGCGAGTGATGGACTTTCTCGACCCCGCCACAGAACACAGAAGCATGCTGGGAGGCAGGGTCGGAAATTAACAGGGCCTTGTGACAAAAATGCTTTACAAATTCAAGTGGTATTCTGGACAGCAAAATCGAGGATGACGAGCCAGATGAAGACAGCGGGGCGGAACCAGCCAGCACCAGTACAGGGACGTCTGTGACCAGTCCAGAAGCGATGAGATCCAGCATTGTAAAGCGGAGGAGATCAGAGACACTTGAGCTATTGGAGAAATATCTGGCAACTAAAGATGCAAAGGACAGAGAGAAAGACGAACAACAGCAAGACGAAGTCGATTTATTCCTGCGGAGTTTAGCACCTGCATTAAGACGCTTGCCTGCTTCAAAACAATCCTTGGTGAAGCTTCAAATCCAAAAAATACTTCATGACGCAGAGTTCGGACAGCCCAGCTTTCCACAG
>TCONS_00010016
ATTCAGTCAGAAGAAGTATGGTAGTCAAGATGGACGCtgagctgttgttgtttttggtttCTGAGAACAAGGAACTGTTTGATAAGAACCACAGCGAGTACAAAAACACGAAACGGAAAGAAGCGCTCTGGCAAGGAATAGCAGACAAAATGGGAGTCGACGGTGAGTTTTGTTTTGCTGCAGCTTGTTGTGTAGCGGTGCAGGCAGCGCGCTAAAACACCATCATCACCAAacgtttgtgcgtttgtttgtgtaGTGGAAGAGGTGAAAGCTAAATGGAAAAACCTCAGAGACACATACACCAGGAAAAAGCGACTGGAGCAGGACGGCAGTCGTAGTGGACGAGCTGCTAAGAAAAAGAAGCAATGGAAATATATGCGAGTGATGGACTTTCTCGACCCCGCCACAGAACACAGAAGTGGTATTCTGGACAGCAAAATCGAGGATGACGAGCCAGATGAAGACAGCGGGGCG

Function

symbol description
si:ch211-207i20.3 Predicted to enable DNA binding activity. Predicted to be located in nucleus.

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141222-71 Predicted to enable DNA binding activity. Predicted to be located in nucleus.

Ensembl:

ensembl_id ENSDARG00000071733

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010014 False 802 mRNA 0.45 3 9510477 9516981
TCONS_00010015 False 857 nonsense_mediated_decay 0.47 3 9510580 9516981
TCONS_00010016 True 474 nonsense_mediated_decay 0.47 2 9510871 9516953

Neighbor

gene id symbol gene type direction distance location
XLOC_005190 si:ch211-207i20.2 coding downstream 12417 9482875 ~ 9498060 (-)
XLOC_005189 pgap3 coding downstream 41859 9449665 ~ 9468618 (-)
XLOC_005188 erbb2 coding downstream 72250 9360316 ~ 9438227 (-)
XLOC_005187 CR457459.1 coding downstream 164992 9345364 ~ 9345485 (-)
XLOC_005186 pth3r coding downstream 215658 9257457 ~ 9294819 (-)
XLOC_005192 nudt13 coding upstream 2269 9519250 ~ 9538578 (-)
XLOC_005193 arg1 coding upstream 80170 9597151 ~ 9617770 (-)
XLOC_005194 heatr1 coding upstream 102928 9619909 ~ 9700605 (-)
XLOC_005195 AL732629.1 coding upstream 131247 9648228 ~ 9648345 (-)
XLOC_005196 AL732629.2 coding upstream 152946 9669927 ~ 9671137 (-)
XLOC_005185 NA non-coding downstream 272683 9227386 ~ 9237794 (-)
XLOC_005184 CR854953.1 non-coding downstream 393299 9117052 ~ 9117178 (-)
XLOC_005180 CR354554.1 non-coding downstream 650170 8860193 ~ 8860307 (-)
XLOC_005178 NA non-coding downstream 935452 8573933 ~ 8575025 (-)
XLOC_005199 BX928755.1 non-coding upstream 543655 10060636 ~ 10063668 (-)
XLOC_005200 NA non-coding upstream 607679 10124660 ~ 10129902 (-)
XLOC_005214 NA non-coding upstream 1252150 10769131 ~ 10772946 (-)

Expression


Co-expression Network