XLOC_005192 (nudt13)


Basic Information

Item Value
gene id XLOC_005192
gene name nudt13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 9519250 ~ 9538578 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010017
atgtatattttgtgttTCCTGATGTCTCTAGATTTGGAACAAATTCTTGAGAAGGTTGGAAAGGACAAACACTTTATTAATGAATCACTTCTTCTGGGATGCACCGACAAGAGTGAACCCCAGTTCTCTCTGGAAGTGGGTGAAGTAGAGCGCAGTGCATTGGAACAGGAGTGCAGAGGTACATTTGTGGACCTCCGGAAAGCTTTCTTCATGATAACTCCATCAGAGTCTGCTCTTGCTGCAAaagGCCAAGCTCTCCTCCGATGGCACCAGACCAATGGCTTCTGTAGTGCCACAGGGCAGCCCACCACCAGGAACCAATCAGGAAGTTTTAGAGTTTGCCAAAGCAGTGGTATCACCTACTACCCTAAAATGTCTCCAGTGGTGATTGTTCTGGTGTCTGATGGGAGCAGGTGTCTGCTGGCGCGACAGGCCATGTTTCCTCCAGGCATGTACAGCGCACTCTCTGGCTTCTGTGACATGGGAGAGTCAGTGGAGGAGGCGCTGCACAGAGAGGTGGCAGAAGAGGTGGGGTTAGAGGTGGAGAATCTTCAGTACTCTGGATCACAGCACTGGCCATTCCCACAAAGCTCCTTTATGTTAGCCTGTCACGCCACGGTAAACCCAAACAAAACACAGGTGAATATAGACAAGGCTGAACTTGAGGATGCTCGCTGGTTCACTTTAGAAGAAATAACAACAGCACTGCAGAATCCTCCACGCAACCCAAGAGAACAGCCACCTGTGTTCTGGGTCCCACCTTCATATGCCATTGCCAATCAGCTCATTCGGGAATGGGCCAATCAGCAGCAACTATTAAGAAGCACACATAGACTCAAGTAA
>TCONS_00010018
CCACTCTTGATGACGTAATGACGTAGGGCATGTTACGCGGCGCGGCAATGTTTTCATGAGCACAAAAACAATCATGATTATTTGAATAAGTATGTTACAACTTGATAGTGTATTACTTACGTAATAGTGTATTATGctataaaaagtacattttactAAAGTGTGAGAACAGCATATAATTATCAGCATTTATTTATTCGAATTATTGCGGATTTGTGTGTTCTAGTTTGCGTTTCTGTGATTCATCTCATCGTGCCTTAACAAAAACTAGGACAAAACGTCTGCCGTTTAAAGAAATCCGTGACACTGAAGTAATAGATTGTACTGTCACCTTAGGTTTGTTTCAAAGTTTCAAGGGCAAGTTCCTAAACCCATGACTGTTTCAGTTGAGTGTGAATGTTGAAACCTTCATACACACAGGCAGTTTATTGTGGGTATTTTAGCCATgctgcagtccttcaagctcttCAACAACTGTAATCTGGTGTTTTCTCGCTCCTGCTCCGGATATGTGTCTCGAACGAGGTATCTTATGAGATTAAAGGAAGATGATGAGGCGTGCCGAGAGGCGCTGAAATTTGCCAATGTTTTACTGTATCATAAACTCGCTCCTCTGCTGCAGAAGACCAGAAGTGGGGTTTGCAAAGTGGCTTCTTTCAAAACCGCAGATTTGGAACAAATTCTTGAGAAGGTTGGAAAGGACAAACACTTTATTAATGAATCACTTCTTCTGGGATGCACCGACAAGAGTGAACCCCAGTTCTCTCTGGAAGTGGGTGAAGTAGAGCGCAGTGCATTGGAACAGGAGTGCAGAGGTACATTTGTGGACCTCCGGAAAGCTTTCTTCATGATAACTCCATCAGAGTCTGCTCTTGCTGCAAaagGCCAAGCTCTCCTCCGATGGCACCAGACCAATGGCTTCTGTAGTGCCACAGGGCAGCCCACCACCAGGAACCAATCAGGAAGTTTTAGAGTTTGCCAAAGCAGTGGTATCACCTACTACCCTAAAATGTCTCCAGTGGTGATTGTTCTGGTGTCTGATGGGAGCAGGTGTCTGCTGGCGCGACAGGCCATGTTTCCTCCAGGCATGTACAGCGCACTCTCTGGCTTCTGTGACATGGGAGAGTCAGTGGAGGAGGCGCTGCACAGAGAGGTGGCAGAAGAGGTGGGGTTAGAGGTGGAGAATCTTCAGTACTCTGGATCACAGCACTGGCCATTCCCACAAAGCTCCTTTATGTTAGCCTGTCACGCCACGGTAAACCCAAACAAAACACAGGTGAATATAGACAAGGCTGAACTTGAGGATGCTCGCTGGTTCACTTTAGAAGAAATAACAACAGCACTGCAGAATCCTCCACGCAACCCAAGAGAACAGCCACCTGTGTTCTGGGTCCCACCTTCATATGCCATTGCCAATCAGCTCATTCGGGAATGGGCCAATCAGCAGCAACTATTAAGAAGCACACATAGACTCAAGTAA

Function

symbol description
nudt13 Predicted to enable NAD+ diphosphatase activity. Orthologous to human NUDT13 (nudix hydrolase 13).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-60 Predicted to enable NAD+ diphosphatase activity. Orthologous to human NUDT13 (nudix hydrolase 13).

Ensembl:

ensembl_id ENSDARG00000057417

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010017 False 843 mRNA 0.49 6 9519250 9533956
TCONS_00010018 True 1480 mRNA 0.45 8 9519250 9538578

Neighbor

gene id symbol gene type direction distance location
XLOC_005191 si:ch211-207i20.3 coding downstream 2269 9510477 ~ 9516981 (-)
XLOC_005190 si:ch211-207i20.2 coding downstream 21190 9482875 ~ 9498060 (-)
XLOC_005189 pgap3 coding downstream 50632 9449665 ~ 9468618 (-)
XLOC_005188 erbb2 coding downstream 81023 9360316 ~ 9438227 (-)
XLOC_005187 CR457459.1 coding downstream 173765 9345364 ~ 9345485 (-)
XLOC_005193 arg1 coding upstream 58573 9597151 ~ 9617770 (-)
XLOC_005194 heatr1 coding upstream 81331 9619909 ~ 9700605 (-)
XLOC_005195 AL732629.1 coding upstream 109650 9648228 ~ 9648345 (-)
XLOC_005196 AL732629.2 coding upstream 131349 9669927 ~ 9671137 (-)
XLOC_005197 prdm9 coding upstream 242946 9781524 ~ 9796237 (-)
XLOC_005185 NA non-coding downstream 281456 9227386 ~ 9237794 (-)
XLOC_005184 CR854953.1 non-coding downstream 402072 9117052 ~ 9117178 (-)
XLOC_005180 CR354554.1 non-coding downstream 658943 8860193 ~ 8860307 (-)
XLOC_005178 NA non-coding downstream 944225 8573933 ~ 8575025 (-)
XLOC_005199 BX928755.1 non-coding upstream 522058 10060636 ~ 10063668 (-)
XLOC_005200 NA non-coding upstream 586082 10124660 ~ 10129902 (-)
XLOC_005214 NA non-coding upstream 1230553 10769131 ~ 10772946 (-)

Expression


Co-expression Network