Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_005209 |
| gene name | rac1a |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 10464897 ~ 10476448 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| rac1a | Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Acts upstream of or within cell migration involved in gastrulation; myoblast fusion; and neutrophil chemotaxis. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and dendritic spine. Is expressed in liver; retina; and retinal ganglion cell layer. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 48; colon adenocarcinoma; and pancreatic adenocarcinoma. Orthologous to human RAC1 (Rac family small GTPase 1). |
| id | name | namespace |
|---|---|---|
| GO:0042074 | cell migration involved in gastrulation | biological_process |
| GO:0007520 | myoblast fusion | biological_process |
| GO:1902622 | regulation of neutrophil migration | biological_process |
| GO:0007264 | small GTPase mediated signal transduction | biological_process |
| GO:0043652 | engulfment of apoptotic cell | biological_process |
| GO:0032956 | regulation of actin cytoskeleton organization | biological_process |
| GO:0007015 | actin filament organization | biological_process |
| GO:0016601 | Rac protein signal transduction | biological_process |
| GO:0030593 | neutrophil chemotaxis | biological_process |
| GO:0030865 | cortical cytoskeleton organization | biological_process |
| GO:0030031 | cell projection assembly | biological_process |
| GO:0030036 | actin cytoskeleton organization | biological_process |
| GO:0008045 | motor neuron axon guidance | biological_process |
| GO:0008360 | regulation of cell shape | biological_process |
| GO:0007163 | establishment or maintenance of cell polarity | biological_process |
| GO:0042995 | cell projection | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005938 | cell cortex | cellular_component |
| GO:0031410 | cytoplasmic vesicle | cellular_component |
| GO:0043197 | dendritic spine | cellular_component |
| GO:0031982 | vesicle | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0019901 | protein kinase binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-5415 | Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Acts upstream of or within cell migration involved in gastrulation; myoblast fusion; and neutrophil chemotaxis. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and dendritic spine. Is expressed in liver; retina; and retinal ganglion cell layer. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 48; colon adenocarcinoma; and pancreatic adenocarcinoma. Orthologous to human RAC1 (Rac family small GTPase 1). |
| ensembl_id | ENSDARG00000074849 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00010041 | False | 1893 | mRNA | 0.43 | 6 | 10464897 | 10476448 |
| TCONS_00010042 | True | 798 | lncRNA | 0.44 | 3 | 10465625 | 10470405 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_005208 | uqcrc2b | coding | downstream | 23236 | 10424676 ~ 10441661 (-) |
| XLOC_005207 | mosmob | coding | downstream | 42942 | 10412009 ~ 10421955 (-) |
| XLOC_005206 | eef2k | coding | downstream | 54927 | 10381957 ~ 10409970 (-) |
| XLOC_005205 | mki67 | coding | downstream | 83615 | 10366617 ~ 10381282 (-) |
| XLOC_005204 | ndc80 | coding | downstream | 98928 | 10353333 ~ 10365969 (-) |
| XLOC_005210 | zgc:152977 | coding | upstream | 2218 | 10478666 ~ 10512911 (-) |
| XLOC_005211 | myof | coding | upstream | 41025 | 10517473 ~ 10567188 (-) |
| XLOC_005212 | med24 | coding | upstream | 167626 | 10644074 ~ 10674606 (-) |
| XLOC_005213 | FO704786.1 | coding | upstream | 202578 | 10679026 ~ 10705916 (-) |
| XLOC_005214 | NA | coding | upstream | 292683 | 10769131 ~ 10772946 (-) |
| XLOC_005200 | NA | non-coding | downstream | 334995 | 10124660 ~ 10129902 (-) |
| XLOC_005199 | BX928755.1 | non-coding | downstream | 401229 | 10060636 ~ 10063668 (-) |
| XLOC_005196 | AL732629.2 | non-coding | downstream | 793760 | 9669927 ~ 9671137 (-) |
| XLOC_005195 | AL732629.1 | non-coding | downstream | 816552 | 9648228 ~ 9648345 (-) |
| XLOC_005187 | CR457459.1 | non-coding | downstream | 1119412 | 9345364 ~ 9345485 (-) |
| XLOC_005222 | BX572641.1 | non-coding | upstream | 1858768 | 12335216 ~ 12335331 (-) |
| XLOC_005224 | NA | non-coding | upstream | 2626418 | 13102866 ~ 13106223 (-) |
| XLOC_005237 | NA | non-coding | upstream | 3661838 | 14138286 ~ 14144159 (-) |
| XLOC_005240 | NA | non-coding | upstream | 4363339 | 14839787 ~ 14840559 (-) |
