XLOC_005210 (zgc:152977)


Basic Information

Item Value
gene id XLOC_005210
gene name zgc:152977
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 10478666 ~ 10512911 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010043
ATTTAAATAGCCACCTGAATGCGTGATCATTAGAAAAACGACTCTACACCGTTCGCGCTGTATCGCGCTAAAACAACAGAAACGATCAAAAACAACCCTTATTCCTAAACTGCAGTTCCGTTATTCTACATCTGCATCTGAGAGAAAATAAACGACGTTCTGATCCAGCTACTCTTCCGTTGACTTTGAGAGGGATCTCAGGATTGAGCCCATCTGTGAGTTACCAAGGATGTCCAGACGCAGTCTCCGTCTGCACACCAGCGCAAGTCACTATGGGGACGACAGCCTGCTTGACCACCACAGCGCCTCCTACAGCCGTGAAAAGACTCTGAAGAGCAGAAGATCTTGTCATTCTGTTTTAGAGTCAGCACCAAATTTTCAAACGCCGAGGTTTGCCTCAACATCAGTCCTGCAGGCACATAACAGCACCCTGAACAGCTGTGCCCCCAGTGATGCCTCTCTGCTGTCCTCTCTGCTGGATGAGTCCTCCATACAGGAGCGCACACTTGTTGACAGCTTCTGGGgtTTGGATGAAGAACGTGAAATCCATGaccAACCAATCGTTTCACAACTCATCACAATGGAAGCCAAGATGCAGACCTCCACAACACAGAATGGCTACATCTCTAAAGACCATCCCATCCCGTCTCCCACCAAGAACGACAGCTCCCTTAATAATACAGCTGTACATCAGGCATCTTTAACAGAAGCTCCCAGCACCGCCACAACAGTTTACTGCAGGGACAAGAATCGCAAACATAAACCAGGTGTACTGAGGAGGTTGTCTGAGATGTGCCTTCATTTCAGCAGAAGAATTATTGCACTTGTAGTGTACATATGCACACTGCTGATACAAGTGACTCTGCTCAAAGGTCTGGTGTTATCGGTGTCGCTCTGGTGTGTGCGAGTGGCTAAGGGAATTGCTCACTCTGCAGCCACATTTCTGAGGAAGACACTCATGTCTGTGCGGCAAATGAAAGCCGCCTGTTGGTGTGCTAAGAGAGGCAATCAGAAGTACATCAGCACTATGAGTGTTAAAGAGGTGGTGCTTCAAAAGGAGCAACCAAAGTTTAGCGGCGTACTGTGGAAGGCAGCTTCAAATAGCATCTTGTGGCTAGTCAATCTCTTTACAACGTGTCTCCCTATGCTTTCAAAAGTCCTGTTTCTTGTACCTTTACTTCTGTTCCTCGCTCTATACTACTGGGGGCCATCTGGACTGATAGCCATGCTGCCTGCAACTAGTATGATGAGGGACAACTCCCACCTCAGTCCTCCAACATCCTCTATGGGTGGCTTAGATGAGGGACAAACTACAGCTGACACAGACTCTCAGAGGCCATCAGTGGTGTCTTCAGTAGAGGCAGAGAGGCTGATGCGCTTGGAGGAGAGCGTGTCTCAGCTGTGGGATCGAGTGGCTGGAGGTTTGCTCAGGCAGGAAGAGCAGCACACTGAAATGCTCAGTCTGTATAACACCCTGCGCTCAGAGATTCACGGATACACTGACAGAGAGAGTCTGGGCAAATGGATTGGAGATATGTTGGAGGAGAGATTCAGCCTACTAAAAGGAGAAGTACAGAAAGAGGTCAAGTACACACAGCAGCGTCAGGAAAAGCATGCAGAAGAGCGTCAGTCAGAGAACACTCGACTCGCTGAAGCTGAGGCTTTACTCCAGACACTTGCACGCAAAACTGAGgagcTGCAGAGAAAACAAGAGCCCACACTCAGAAAGGTTCCTGAGGCAGAGGCGCCTAGCCCTGATCCTCAAAGcGAGGAAGCTGAGAGCAGCGCTGCTGAGGCTCTTCTGGTAGAGGTAAGGCGCCTAGAGGATGCTTTGGAGAGGATCAGAGATGATGTACAGGGGCTGATGAAATGCAGAGACAAATGTGAGCAACTGGACTCTTTCTCAGGCTCAGTGTCTGCACAGGTGAAGGAGGAAATCAAATCTTTGTTTTATGGCAATGATGTTGGAGCAGCAGAGCttgagcttccagaatctctcctgCAGTGGATCTCAGATCACTTTGTGAGCACCTCTGAACTGCAGACCTCACTCAGTGCATTGGAGAGCAGCATTCTGGGCAACCTGTCCCTTCAGGTAGAAGAGGGTCAGTTACCTTCTAAAGAGACGATCACCAAAACTGTACTAAATGCGGCAGGGGAGGCAGGCCTCTCTGAGGAACATGTACAGCTGATTGTCACCAATGCAATAAAGCTCTACTCTGAAGACCGCATTGGTATGGTGGACTATGCATTGGAATCTGGAGGAGGAAGCATCATAAGCACACGTTGTTCAGAGTCCTTCAACACCAAAACGGCACTGCTGAGTCTGTTTGGCCTCCCGCTGTGGTACTTCTCTCAGTCACCACGTGTagtcatacagCCAGAAGTGCATCCAGGCAACTGCTGGGCATTCAAAGGTTCAACTGGTTATATAGTGATCGGTTTGTCCATGAAGATCGTGCCAACAGCCTTTACACTGGAACATGTGGCTAAATCTCTGTCGCCCACTGGAAACATCAGCAGTGCCCCACGAGAATTCAATGTATATGGTCTTGATGATGAGCAGCAGGAAGAGGGGCAGTTGCTCGGACAGTATGTTTATGAAGAAGATGGGGATTCTCTTCAGACCTTCCTGGTCTCTGACGAGGTCTCGAGTGGTTTCCAGATCATTGAGATGAGAGTGCTGTCTAACTGGGGGAATCCTGAATACACCTGTGTGTACCGTTTCCGGGTGCATGGGAAACCTTCCTAACCCAATGACTTGCAAGCACTTGGGACATTACGAACTCCTGACAGTTTGTCACCTGACTGACAAAAAgaactgaggaaaaaaaaagtgcCATAGAGCTATCCTGTTGGACCTGAGATGACCCCAGGACGTCTGCGGTGTATGATTGCATGCTGGTACATGTACTGTGAAGCCTCAGGGCCACACTCAGCACTTGCACTCTCGTCTCATCCTGATGCATTACACACATTTTTCTCTTTTATCAAGTTATTTGGAAtatctattattaatatatt
>TCONS_00010044
ATTTAAATAGCCACCTGAATGCGTGATCATTAGAAAAACGACTCTACACCGTTCGCGCTGTATCGCGCTAAAACAACAGAAACGATCAAAAACAACCCTTATTCCTAAACTGCAGTTCCGTTATTCTACATCTGCATCTGAGAGAAAATAAACGACGTTCTGATCCAGCTACTCTTCCGTTGACTTTGAGAGGGATCTCAGGATTGAGCCCATCTGTGAGTTACCAAGGATGTCCAGACGCAGTCTCCGTCTGCACACCAGCGCAAGTCACTATGGGGACGACAGCCTGCTTGACCACCACAGCGCCTCCTACAGCCGTGAAAAGACTCTGAAGAGCAGAAGATCTTGTCATTCTGTTTTAGAGTCAGCACCAAATTTTCAAACGCCGAGGTTTGCCTCAACATCAGTCCTGCAGGCACATAACAGCACCCTGAACAGCTGTGCCCCCAGTGATGCCTCTCTGCTGTCCTCTCTGCTGGATGAGTCCTCCATACAGGAGCGCACACTTGTTGACAGCTTCTGGGgtTTGGATGAAGAACGTGAAATCCATGaccAACCAATCGTTTCACAACTCATCACAATGGAAGCCAAGATGCAGACCTCCACAACACAGAATGGCTACATCTCTAAAGACCATCCCATCCCGTCTCCCACCAAGAACGACAGCTCCCTTAATAATACAGCTGTACATCAGGCATCTTTAACAGAAGCTCCCAGCACCGCCACAACAGTTTACTGCAGGGACAAGAATCGCAAACATAAACCAGGTGTACTGAGGAGGTTGTCTGAGATGTGCCTTCATTTCAGCAGAAGAATTATTGCACTTGTAGTGTACATATGCACACTGCTGATACAAGTGACTCTGCTCAAAGGTCTGGTGTTATCGGTGTCGCTCTGGTGTGTGCGAGTGGCTAAGGGAATTGCTCACTCTGCAGCCACATTTCTGAGGAAGACACTCATGTCTGTGCGGCAAATGAAAGCCGCCTGTTGGTGTGCTAAGAGAGGCAATCAGAAGTACATCAGCACTATGAGTGTTAAAGAGGTGGTGCTTCAAAAGGAGCAACCAAAGTTTAGCGGCGTACTGTGGAAGGCAGCTTCAAATAGCATCTTGTGGCTAGTCAATCTCTTTACAACGTGTCTCCCTATGCTTTCAAAAGTCCTGTTTCTTGTACCTTTACTTCTGTTCCTCGCTCTATACTACTGGGGGCCATCTGGACTGATAGCCATGCTGCCTGCAACTAGTATGATGAGGGACAACTCCCACCTCAGTCCTCCAACATCCTCTATGGGTGGCTTAGATGAGGGACAAACTACAGCTGACACAGACTCTCAGAGGCCATCAGTGGTGTCTTCAGTAGAGGCAGAGAGGCTGATGCGCTTGGAGGAGAGCGTGTCTCAGCTGTGGGATCGAGTGGCTGGAGGTTTGCTCAGGCAGGAAGAGCAGCACACTGAAATGCTCAGTCTGTATAACACCCTGCGCTCAGAGATTCACGGATACACTGACAGAGAGAGTCTGGGCAAATGGATTGGAGATATGTTGGAGGAGAGATTCAGCCTACTAAAAGGAGAAGTACAGAAAGAGGTCAAGTACACACAGCAGCGTCAGGAAAAGCATGCAGAAGAGCGTCAGTCAGAGAACACTCGACTCGCTGAAGCTGAGGCTTTACTCCAGACACTTGCACGCAAAACTGAGgagcTGCAGAGAAAACAAGAGCCCACACTCAGAAAGGTTCCTGAGGCAGAGGCGCCTAGCCCTGATCCTCAAAGcGAGGAAGCTGAGAGCAGCGCTGCTGAGGCTCTTCTGGTAGAGGTAAGGCGCCTAGAGGATGCTTTGGAGAGGATCAGAGATGATGTACAGGGGCTGATGAAATGCAGAGACAAATGTGAGCAACTGGACTCTTTCTCAGGCTCAGACTGCACTTTGATAAACGTGAAAGTGTATGAACAACAATAACTATAAACTGACAAACTCGAGTgagaaaataaactgaattttgaCTTTCAAA
>TCONS_00010045
CTCAACATCAGTCCTGCAGGCACATAACAGCACCCTGAACAGCTGTGCCCCCAGTGATGCCTCTCTGCTGTCCTCTCTGCTGGATGAGTCCTCCATACAGGAGCGCACACTTGTTGACAGCTTCTGGGgtTTGGATGAAGAACGTGAAATCCATGaccAACCAATCGTTTCACAACTCATCACAATGGAAGCCAAGATGCAGACCTCCACAACACAGAATGGCTACATCTCTAAAGACCATCCCATCCCGTCTCCCACCAAGAACGACAGCTCCCTTAATAATACAGCTGTACATCAGGCATCTTTAACAGAAGCTCCCAGCACCGCCACAACAGTTTACTGCAGGGACAAGAATCGCAAACATAAACCAGGCAATCAGAAGTACATCAGCACTATGAGTGTTAAAGAGGTGGTGCTTCAAAAGGAGCAACCAAAGTTTAGCGGCGTACTGTGGAAGGCAGCTTCAAATAGCATCTTGTGGCTAGTCAATCTCTTTACAACGTGTCTCCCTATGCTTTCAAAAGTCCTGTTTCTTGTACCTTTACTTCTGTTCCTCGCTCTATACTACTGGGGGCCATCTGGACTGATAGCCATGCTGCCTGCAACTAGTATGATGAGGG
>TCONS_00010046
CAGCTGAACACAGGAAGTAGAGCAAGCCTTCTTAATTCGCTTGATCCGTCCAGAGCTCCTTCTGCCCATAGGAGCATGATTGTGCAGTAATGTGATTTTTCCATGGGATGACTAGTGACGACACATGGAATCTGGAGAGCTGGGGCTGGACAGTGCTATCCAGCTACTCTTCCGTTGACTTTGAGAGGGATCTCAGGATTGAGCCCATCTGTGAGTTACCAAGGATGTCCAGACGCAGTCTCCGTCTGCACACCAGCGCAAGTCACTATGGGGACGACAGCCTGCTTGACCACCACAGCGCCTCCTACAGCCGTGAAAAGACTCTGAAGAGCAGAAGATCTTGTCATTCTGTTTTAGAGTCAGCACCAAATTTTCAAACGCCGAGGTTTGCCTCAACATCAGTCCTGCAGGCACATAACAGCACCCTGAACAGCTGTGCCCCCAGTGATGCCTCTCTGCTGTCCTCTCTGCTGGATGAGTCCTCCATACAGGAGCGCACACTTGTTGACAGCTTCTGGGgtTTGGATGAAGAACGTGAAATCCATGaccAACCAATCGTTTCACAACTCATCACAATGGAAGCCAAGATGCAGACCTCCACAACACAGAATGGCTACATCTCTAAAGACCATCCCATCCCGTCTCCCACCAAGAACGACAGCTCCCTTAATAATACAGCTGTACATCAGGCATCTTTAACAGAAGCTCCCAGCACCGCCACAACAGTTTACTGCAGGGACAAGAATCGCAAACATAAACCAGGTGAGAG

Function

symbol description
zgc:152977 Predicted to enable protein-membrane adaptor activity. Predicted to be involved in nuclear envelope organization. Predicted to be located in membrane. Predicted to be integral component of nuclear inner membrane. Predicted to be part of meiotic nuclear membrane microtubule tethering complex. Predicted to be active in nuclear envelope. Orthologous to human SUN1 (Sad1 and UNC84 domain containing 1).

GO:

id name namespace
GO:0006998 nuclear envelope organization biological_process
GO:0034993 meiotic nuclear membrane microtubule tethering complex cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0005639 integral component of nuclear inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043495 protein-membrane adaptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-353 Predicted to enable protein-membrane adaptor activity. Predicted to be involved in nuclear envelope organization. Predicted to be located in membrane. Predicted to be integral component of nuclear inner membrane. Predicted to be part of meiotic nuclear membrane microtubule tethering complex. Predicted to be active in nuclear envelope. Orthologous to human SUN1 (Sad1 and UNC84 domain containing 1).

Ensembl:

ensembl_id ENSDARG00000077178

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010043 False 3024 mRNA 0.49 21 10478666 10512911
TCONS_00010044 False 2006 mRNA 0.48 16 10491680 10512911
TCONS_00010045 False 620 mRNA 0.48 7 10495510 10505986
TCONS_00010046 True 769 mRNA 0.50 5 10503628 10508952

Neighbor

gene id symbol gene type direction distance location
XLOC_005209 rac1a coding downstream 2218 10464897 ~ 10476448 (-)
XLOC_005208 uqcrc2b coding downstream 37005 10424676 ~ 10441661 (-)
XLOC_005207 mosmob coding downstream 56711 10412009 ~ 10421955 (-)
XLOC_005206 eef2k coding downstream 68696 10381957 ~ 10409970 (-)
XLOC_005205 mki67 coding downstream 97384 10366617 ~ 10381282 (-)
XLOC_005211 myof coding upstream 4562 10517473 ~ 10567188 (-)
XLOC_005212 med24 coding upstream 131163 10644074 ~ 10674606 (-)
XLOC_005213 FO704786.1 coding upstream 166115 10679026 ~ 10705916 (-)
XLOC_005214 NA coding upstream 256220 10769131 ~ 10772946 (-)
XLOC_005215 si:ch73-30l9.1 coding upstream 732003 11244914 ~ 11258404 (-)
XLOC_005200 NA non-coding downstream 348764 10124660 ~ 10129902 (-)
XLOC_005199 BX928755.1 non-coding downstream 414998 10060636 ~ 10063668 (-)
XLOC_005196 AL732629.2 non-coding downstream 807529 9669927 ~ 9671137 (-)
XLOC_005195 AL732629.1 non-coding downstream 830321 9648228 ~ 9648345 (-)
XLOC_005187 CR457459.1 non-coding downstream 1133181 9345364 ~ 9345485 (-)
XLOC_005222 BX572641.1 non-coding upstream 1822305 12335216 ~ 12335331 (-)
XLOC_005224 NA non-coding upstream 2589955 13102866 ~ 13106223 (-)
XLOC_005237 NA non-coding upstream 3625375 14138286 ~ 14144159 (-)
XLOC_005240 NA non-coding upstream 4326876 14839787 ~ 14840559 (-)

Expression


Co-expression Network