XLOC_005214



Basic Information


Item Value
gene id XLOC_005214
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 10769131 ~ 10772946 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00010801
ttaacCCAGGCAATGAACTGAGCGCCCTTCACACATGACATCACAGATTAGTGTCTCTGAACACCCTCTCCGGATTAAAGTGATTGCAGGTATGGCCCTGGCACTGGAGTGGAGTGGGCACATGGACTGGCATGAATGTTGGCACAGAGCTTATGCAAGCAGATACAGTGAGGATGGTAGAGGCATGACTGAGGGTCTCAGGAACAGATGAGGGATTCTTGGATTGATTTCGGGAGACAAGCATCAGAGGGAAAGAGTCCTGATCTGCCGGAGTCCATGATAGCAGAGATGTGAGGGTGAAACAGATGTGATGAGATGTTTGGAGGACTGCATGAGTCAACCAGACCAGGAACCCGAGGGTGTTTGATGACCAGCTGAGTTTTACTATCCATATTTCAAca

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00010801 True 401 lncRNA 0.49 2 10769131 10772946

Neighbor


gene id symbol gene type direction distance location
XLOC_005213 FO704786.1 coding downstream 63215 10679026 ~ 10705916 (-)
XLOC_005212 med24 coding downstream 94525 10644074 ~ 10674606 (-)
XLOC_005211 myof coding downstream 201943 10517473 ~ 10567188 (-)
XLOC_005210 zgc:152977 coding downstream 256220 10478666 ~ 10512911 (-)
XLOC_005209 rac1a coding downstream 292683 10464897 ~ 10476448 (-)
XLOC_005215 si:ch73-30l9.1 coding upstream 471968 11244914 ~ 11258404 (-)
XLOC_005216 get4 coding upstream 490008 11262954 ~ 11306766 (-)
XLOC_005217 zgc:174164 coding upstream 542903 11315849 ~ 11349899 (-)
XLOC_005218 htra1b coding upstream 615778 11388724 ~ 11457625 (-)
XLOC_005219 plekha1b coding upstream 723794 11496740 ~ 11593436 (-)
XLOC_005200 NA non-coding downstream 639229 10124660 ~ 10129902 (-)
XLOC_005199 BX928755.1 non-coding downstream 705463 10060636 ~ 10063668 (-)
XLOC_005196 AL732629.2 non-coding downstream 1097994 9669927 ~ 9671137 (-)
XLOC_005195 AL732629.1 non-coding downstream 1120786 9648228 ~ 9648345 (-)
XLOC_005187 CR457459.1 non-coding downstream 1423646 9345364 ~ 9345485 (-)
XLOC_005222 BX572641.1 non-coding upstream 1562270 12335216 ~ 12335331 (-)
XLOC_005224 NA non-coding upstream 2329920 13102866 ~ 13106223 (-)
XLOC_005237 NA non-coding upstream 3365340 14138286 ~ 14144159 (-)
XLOC_005240 NA non-coding upstream 4066841 14839787 ~ 14840559 (-)
XLOC_005243 NA non-coding upstream 4344941 15117887 ~ 15120113 (-)

Expression



Co-expression Network