XLOC_005215 (si:ch73-30l9.1)


Basic Information

Item Value
gene id XLOC_005215
gene name si:ch73-30l9.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 11244914 ~ 11258404 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010050
gacataacaacTTTATTTTCTCGTGATCACGACATAACAAAAAGTTTTGATCAAGACTTTTATTTTCTCACAAAAGTACTTCCGTACGTACAAACGGTATCTTCGACGTAAAGTTAGCCTAAATGTATCCCGATAAAAGCTCGCgtgctgtttttgtgttttaattcATCAAGTTTTAAATCATACGTCAAGATGGACTTTATTTTTGCTCTAAGAGAGAGGGGTGTACCTGAGGAGAACCTGACCAAAATGGAGGAGGATAAGATTGATTGTGATGTTGCACGACTACTAAATGAAGAAGAACTGTCTAAGTATATTCCCCGATATGGAGATAGGGTTTTTGCAAAGAACTGGATGCCAGCAAAACGAAGAAAAATGAAACTACCAGCAGCTCAAAATCAGAAAAAGAAGTATGGATTTGGCAATAGGAATGCTGAAACTAAGACAAGAAAAATTGAACTTGGCTGGATGAACTACCAAGATAGCAGCTACAAACAAGTACGAAGACCTAAAGGAGGTGGAACACGGGAAATTGTTGTTCAAAAAGAAGACACGATGTCATCTGTTCTGAATGTGGGGAAAAGTCTTTTTTTCCCGAATGGTGAATCAGCAAAAGGAAATGCTGATCATTTTACGTTTATGCTCTGTGGTAGTGGCTCTGAAGATCCACTTAAAGAAGATCAGACAATTGGCAGCTTGTATGAGGCAACACATTTTAGAATTCTCAGGCTGTATGTGTGTACAAGACTGAAAGATCAAGAATCAGATGAAATTGACACAATTCTGACTCTAAAGAAACCCCGGCATGCTTCCACACCAGATGATGGTCCATGTACTTCTGGGTGTAATGATCAGAACAGAAGTCAAACTTTGCAATCCCCACCTCTTATGCATGTCAGCTCAATTGATGTACTTCAGTCTTCTGAAGAAGTGGTTTGTCTGGGTAATGATGTAGACACATCTTTTGACATGGTCTCTGACACACTTGTGGACTCACCTGTACATGTTGATTTTGTTGTTGACGAAACAACCACAGATGTCGTTCCATTCAATTCAGATCCAGACGTTTTTCCAGGTAACTCTATTCATGAATCCACAAATGCTGAAGAAACAGTGCCAGAAGACACAATGTCAGTGCCATCTCAGGCAGTTGACTCCCAGGAACCAGAGTCATTCTTTGAAAACCCAAGGAATGTTACTGAAAGTGAAACCGTTGTAATTCGCAGAGTTCACTGTGTCAATGACATGATTCAAGCTTTCTCTGACAAAAACATTCTACATGCCAATGTAACTTTCAAACGTGTTCTTGAAAATGGTGAGGAGGAAGCTGGCATTGGTGATGGAGTGCTCCAGGACTGTGTTACTGAATTTTGGCATATATTTTATGCTACAAGAACCTGTGGAACGACATTCAAGATACCTACACTGCATCACACTTACCAAGAAAGAGAATGGCAAGCTGTTGCAAGGATTTTTGTGCTTGGATGGCTGCGCTTTGGTTACCTGCCGATTCAGCTggcgcctccttttttaaaagaaGCTTTGTCACTTCCATCAGAAACAAGTCTCATGGAGGCGTACTTCAGTTATATTAGTCAAGCAGAGAAGGATGTTTTGAGTGAAGCGCTCCAGGACTTCCAAAATGCTGATATGGATGAAGTTCTAAGTGTCCTCAGCAGTCACAGCTGCACAGTACTTCCAAAGGAAAAGAATCTGCAGAAAATACTTGAAGAAATTGCACATAAAGAGATGGTGCAGCAACCAGCGTACATTATAAAGTGCTGGCGACCCATTCTCCAATCTGTTGGGGAAAACATGACTGCAGAAAGGCTGGAGCAGATAACTAATGATCTCCAACCAAAGGCGAGAAATGTTGCCAAAAACCTGAAGTTCCCACTTTCGATGCCCCCATCTGAAACAACTGTGTCAAACCATCTCTTGCGATTCATTAGGGAGCGAGACCAGAAGGAGCTTGGTCTTTTTCTCAGATACTGCACAGGCTCGGATTTATTTCTCTCCAAGACGATTCACGTAACATTTAAAGAGATGAGCGAGTTTACAAGAAGGCCGATTGCTCACACTTGTACACAACAACTGGAATTGGCAAGCGACTGCAGCACCTATGCAGAATTTAGGGCAGAGTTTTGCTCTGTGCTAAACAGTGGAGTATGGGTAATGGATATTTTATAGCCATACAAAGTTTAAAGTTGAAGTATGCTAAACCTCAAGCTGTGCTAAACAGCGGAGTGTGTGTAATGGATTTTTTAAATATCCATACAAGGGTTGAAAGATGGTTTGATGTATGTTTAAATACACATAGCAGTTGATGTAGTTGAaacaattgtcattttaaaatctattaaCAGATAAGATTTAGTTGTCAATGGTAGGCTAATTCATATTGTATACCCTTTCTATCAGACATGTAGCTAATTTAAACAGGACTGGTTTATTTACTCCTGTAAATAGTTTTTCTTTTCACTTTTATTCCTTGTGTACTGTTTACATTAAACTGTTAATCTAAGTATTCTGTGGTTTAAGCAGTACAGTTTCACTTGAATCGTTTCATTTGCactaatttaattgtttttataaacaaCTGTGTACAAAAATTATGGATGTTACAAATtaaaagtacactgaa

Function

symbol description
si:ch73-30l9.1 Predicted to enable ubiquitin-protein transferase activity.

GO:

id name namespace
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-132 Predicted to enable ubiquitin-protein transferase activity.

Ensembl:

ensembl_id ENSDARG00000095891

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010050 True 2644 mRNA 0.39 2 11244914 11258404

Neighbor

gene id symbol gene type direction distance location
XLOC_005214 NA coding downstream 471968 10769131 ~ 10772946 (-)
XLOC_005213 FO704786.1 coding downstream 538998 10679026 ~ 10705916 (-)
XLOC_005212 med24 coding downstream 570308 10644074 ~ 10674606 (-)
XLOC_005211 myof coding downstream 677726 10517473 ~ 10567188 (-)
XLOC_005210 zgc:152977 coding downstream 732003 10478666 ~ 10512911 (-)
XLOC_005216 get4 coding upstream 4550 11262954 ~ 11306766 (-)
XLOC_005217 zgc:174164 coding upstream 57445 11315849 ~ 11349899 (-)
XLOC_005218 htra1b coding upstream 130320 11388724 ~ 11457625 (-)
XLOC_005219 plekha1b coding upstream 238336 11496740 ~ 11593436 (-)
XLOC_005220 btbd16 coding upstream 343155 11601559 ~ 11649690 (-)
XLOC_005200 NA non-coding downstream 1115012 10124660 ~ 10129902 (-)
XLOC_005199 BX928755.1 non-coding downstream 1181246 10060636 ~ 10063668 (-)
XLOC_005196 AL732629.2 non-coding downstream 1573777 9669927 ~ 9671137 (-)
XLOC_005195 AL732629.1 non-coding downstream 1596569 9648228 ~ 9648345 (-)
XLOC_005222 BX572641.1 non-coding upstream 1076812 12335216 ~ 12335331 (-)
XLOC_005224 NA non-coding upstream 1844462 13102866 ~ 13106223 (-)
XLOC_005237 NA non-coding upstream 2879882 14138286 ~ 14144159 (-)
XLOC_005240 NA non-coding upstream 3581383 14839787 ~ 14840559 (-)
XLOC_005243 NA non-coding upstream 3859483 15117887 ~ 15120113 (-)

Expression


Co-expression Network