XLOC_005216 (get4)


Basic Information

Item Value
gene id XLOC_005216
gene name get4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 11262954 ~ 11306766 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010051
GTCAATGTGAAGTACGGCGAGTCTGAAGGCTCAGTGATCGCGTTCGGTTGGTCGGAGCAGTCATGTCGGAGCAGGAGTCTCTGAAGAGCTCCAGCGCGAGGAACCGCGGAGGAGTACAGCGAGTGGAAGGCAAACTGAGAGCCAGTGTGGAAAGAGGAGATTATTATGAGGCACATCAGATGTACCGCACACTATTCTTCAGGTACTTGTCACAAGCAAAGCATGCGGAGGCCAGAGAGTTGATGTATAATGGAGCGTTGCTCTTCTTTAGCTATAATCAGCAAAACAGTGCTTCAGATCTGTCCATGCTGGTACTAGAGTCCCTGGAGAAATCTGAGGCCAAAGTAGATGATGAAACACTAGAGCATCTGGCTAAACTTTTCAGCTTGATGGACCCAAATTCACCCGAGCGGGTGGCATTTGTCTCCAGAGCGATCAAGTGGTCATCAGGAGGGTCAGGAAAGTTGGGCCACCCCAAACTACACCAGCTGCTGGCGCTCACATTGTGGAAAgAACAAAACTACAGTGAATCCCGTTATCATTTTCTGCGCTCATCTGATGGGGAAGGCTGTGCACAGATGCTGGTGGAGTATTCATCAGCGCGAGGCTTTCATGGAGAGGTGGACATGTTTGTAGCACAGGCCGTCTTACAGTTCCTTTGTCTAAAAAACAAGACAAGTGCACTGGTGGTGTTCACCACATACACACAGAAACATCCGTCTATAGAGAAGGGTCCTCCTTTTGTTCAGCCTTTGCTCAATTTCCTCTGGTTCCTCCTGCTGGCGGTGGATGGAGGGAAGTTGACAGTCTTCACAGTGTTATGCGAGCAGTATCAACCATCACTGAAGAAAGACCCTATGTATAATGAgTATCTGGATAGAATAGGACAGCTGTTTTTTGGAGTGCCACCCAAACAGTCGTCATCATATGGTGGTTTGCTAGGAAACCTATTGAATAGCCTAATGGGCTCAGGTGAGGAAGAAGATGGTGAAGAGGCTCACGAAGACAGCAGCCCCATTGAGCTGGACTGAAGCATCTGACTTCACGTCATAAACCAAACCATTCACTGAAGTGAACAATGACCAATCACGCATCCGTTTGGGCGCtctttttcaaaacaaaactaaCTCTTTCCTGTTATTGTTGGACTTTGTTCTGTGTATAGTTTTTAAAGAATGAAGGTGCAACAATATCAAACGTCCCGGACTGTTGAACAAAATTCATAAAAGAGCAGAAAGCGACGCACTTCAGATGTAATCGTGAACACCCTCCATTTGTAGTTCTACTGAGCTTTTGGCGTCAGGGACCCTCATTTGTGAGAGGGACCCTGATGGTACTTTGGCTGTCCTGCCACAGAGGGTGGCGGCTGCTTTTCAAtgtattaataaaagtaattcaATTACTCTTAACTTATAATCCATGCTAATATACTTTGATAAGTCCTACAGTATGATCGCTCAAATCAAAACAAGGCTTGGTTTTTTGTGTCCACACAGCTAGATCTTACCAGGGATACTGCGGTGTCTTTGATAGGACTATTCACCACTTCTGTTACATcgcgtgtgcgtgtatgtgtgtgtgtgagaggatgAGGAAAGCACAGCTCTCACTAATGTGTGCGAGACGTATAGACGAATGCATGTTAGTGTTGATCAGAGTGTGGATGTGTTGTTGTAAGTGTATCGGTCACCAGTGGGCCGCTTCATTCTCTTCTGAGGTGTGATTGAGCATAATTAAAGGATAGAGATGGATGTAACATA
>TCONS_00010052
GCGAGCAGTATCAACCATCACTGAAGAAAGACCCTATGTATAATGAgGAAACCTATTGAATAGCCTAATGGGCTCAGGTGAGGAAGAAGATGGTGAAGAGGCTCACGAAGACAGCAGCCCCATTGAGCTGGACTGAAGCATCTGACTTCACGTCATAAACCAAACCATTCACTGAAGTGAACAATGACCAATCACGCATCCGTTTGGGCGCtctttttcaaaacaaaactaaCTCTTTCCTGTTATTGTTGGACTTTGTTCTGTGTATAGTTTTTAAAGAATGAAGGTGCAACAATATCAAACGTCCCGGACTGTTGAACAAAATTCATAAAAGAGCAGAAAGCGACGCACTTCAGATGTAATCGTGAACACCCTCCATTTGTAGTTCTACTGAGCTTTTGGCGTCAGGGACCCTCATTTGTGAGAGGGACCCTGATGGTACTTTGGCTGTCCTGCCACAGAGGGTGGCGGCTGCTTTTCAAtgtattaataaaagtaattcaATTACTCTTAACTTATAATCCATGCTAATATACTTTGATAAGTCCTACAGTATGATCGCTCAAATCAAAACAAGGCTTGGTTTTTTGTGTCCACACAGCTAGATCTTACCAGGGATACTGCGGTGTCTTTGATAGGACTATTCACCACTTCTGTTACATcgcgtgtgcgtgtatgtgtgtgtgtgagaggatgAGGAAAGCACAGCTCTCACTAATGTGTGCGAGACGTATAGACGAATGCATGTTAGTGTTGATCAGAGTGTGGATGTGTTGTTGTAAGTGTATCGGTCACCAGTGGGCCGCTTCATTCTCTTCTGAGGTGTGATTGAGCATAATTAAAGGATAGAGATGGATGTAACA

Function

symbol description
get4 Predicted to be involved in protein insertion into ER membrane. Predicted to be part of BAT3 complex. Predicted to be active in cytosol. Orthologous to human GET4 (guided entry of tail-anchored proteins factor 4).

GO:

id name namespace
GO:0045048 protein insertion into ER membrane biological_process
GO:0071818 BAT3 complex cellular_component

KEGG:

id description
ko04131 Membrane trafficking
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-030131-5399 Predicted to be involved in protein insertion into ER membrane. Predicted to be part of BAT3 complex. Predicted to be active in cytosol. Orthologous to human GET4 (guided entry of tail-anchored proteins factor 4).

Ensembl:

ensembl_id ENSDARG00000024398

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010051 False 1760 mRNA 0.46 9 11262954 11306766
TCONS_00010052 True 863 mRNA 0.43 2 11262956 11294979

Neighbor

gene id symbol gene type direction distance location
XLOC_005215 si:ch73-30l9.1 coding downstream 4550 11244914 ~ 11258404 (-)
XLOC_005214 NA coding downstream 490008 10769131 ~ 10772946 (-)
XLOC_005213 FO704786.1 coding downstream 557038 10679026 ~ 10705916 (-)
XLOC_005212 med24 coding downstream 588348 10644074 ~ 10674606 (-)
XLOC_005211 myof coding downstream 695766 10517473 ~ 10567188 (-)
XLOC_005217 zgc:174164 coding upstream 9083 11315849 ~ 11349899 (-)
XLOC_005218 htra1b coding upstream 81958 11388724 ~ 11457625 (-)
XLOC_005219 plekha1b coding upstream 189974 11496740 ~ 11593436 (-)
XLOC_005220 btbd16 coding upstream 294793 11601559 ~ 11649690 (-)
XLOC_005221 atoh1c coding upstream 461348 11768114 ~ 11768889 (-)
XLOC_005200 NA non-coding downstream 1133052 10124660 ~ 10129902 (-)
XLOC_005199 BX928755.1 non-coding downstream 1199286 10060636 ~ 10063668 (-)
XLOC_005196 AL732629.2 non-coding downstream 1591817 9669927 ~ 9671137 (-)
XLOC_005195 AL732629.1 non-coding downstream 1614609 9648228 ~ 9648345 (-)
XLOC_005222 BX572641.1 non-coding upstream 1028450 12335216 ~ 12335331 (-)
XLOC_005224 NA non-coding upstream 1796100 13102866 ~ 13106223 (-)
XLOC_005237 NA non-coding upstream 2831520 14138286 ~ 14144159 (-)
XLOC_005240 NA non-coding upstream 3533021 14839787 ~ 14840559 (-)
XLOC_005243 NA non-coding upstream 3811121 15117887 ~ 15120113 (-)

Expression


Co-expression Network