XLOC_005219 (plekha1b)


Basic Information

Item Value
gene id XLOC_005219
gene name plekha1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 11496740 ~ 11593436 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010055
CTGAAAAGTCCAGTACAGGCAGACCGAAAACTGATGCACAGGAGTTTCACAGCTGCTTAGAAGTGTGGTAATGCTTAGTCTCAGAAATGCCGTACGTAGATCGTCAGAACCGGATATGTGGCTTTTTAGACATCGAGGAAATGGAGAACAGTGGCAAGTTTTTACGACGCTACTTTATTCTGGACACGATGGACAGCAGCCTGATGTGGTTCATGGATAACCCTCAGAATCTTCCAGAAGGAACGTCCAATGTCGGCTCAATCAAACTAACATACATATCCAAGGTTAGCGATGCCACCAAATTGCGACCAAAGGCAGAGTTCTGCTTCGTGATCAACGCTGGAATGAGGAAGTTTTACTTGCAGGCCAATGATAAGCAAGATTTAGTGGAGTGGGTCAGTGAGCTGAACAAAGCCACCAAAATCACAGTGCCAAAGTCAGGCGAGCAGGTGGCTCCAAATAcagcagaagcctgtgtggacaCGTCCTCCAGTGCCACCAAACAAGTGTCCTACAAGACGGAGATCGTCGCAGGAGTGCCCATTATCACAACCACACAGGAAAAGGGTGAAGGTCAGAATGGTGCAGACAAGAGTGGACTAAGGAAACCTCCTGGTCAACTGCCATATTACCTGAGCCGCAGTAACCAAGACCAGTCGGTCATTAAAACTGGATATTGTGTCAAACAGGGAGCTGTGATGAAGAACTGGAAGAGGAGATACTTCATGCTGGATGACAATGCACTCAGCTACTTCAAAACAGACATGGAGCGAGAGCCATTAAAGGTTATCCTTCTGAAAGAAGTGAACAAGGTGCAGGAGTGTAAACAAAGTGACTTGATGATGAGGGACAATCTTTTTGAACTGGTTACTACCACGAGAACTTTCTACATTCAGtcTGACAGCCCTGAAGAGATGCACGGCTGGATAAAGGCTATCTCTGGGGCCATAGTGGCCCAGCGGGGTCCTGGACGCTCAGCAGCATCTGAGCCTGCTGAACCAACCTCGACCTTCTACCACGATGAACCAAGTCTCCCAACTTCTCGCTCACCCGTCCCTGCTGAACTCAGTTTCCCAGAATGCCATCTCCCCTCGGGCCATCAGCATGGCGTGGGAGGGAGCAGAGCGAACCAGCATGCGGGCCGGGGCACGAGCGCGCCTGTCGCTCCAGGAGTCGCCCCAAATCTACTTAAAGTAAACACAGATGACTGCTCGCCTTGGCAGAGAAGAACCAACATAACACCACCTTCAAATTCCCCTAAAGATAAAGACTTGCACACTACCGAAGTGTAACAGCAATGTTCTGGGTattttacacacacgcacattacAAATGATAACGGTAGGGACTCAAGCCCAATGCATCATGGGATAATAAGGACTGTGAAATT
>TCONS_00010056
ATGCCGTACGTAGATCGTCAGAACCGGATATGTGGCTTTTTAGACATCGAGGAAATGGAGAACAGTGGCAAGTTTTTACGACGCTACTTTATTCTGGACACGATGGACAGCAGCCTGATGTGGTTCATGGATAACCCTCAGAATCTTCCAGAAGGAACGTCCAATGTCGGCTCAATCAAACTAACATACATATCCAAGGTTAGCGATGCCACCAAATTGCGACCAAAGGCAGAGTTCTGCTTCGTGATCAACGCTGGAATGAGGAAGTTTTACTTGCAGGCCAATGATAAGCAAGATTTAGTGGAGTGGGTCAGTGAGCTGAACAAAGCCACCAAAATCACAGTGCCAAAGTCAGGCGAGCAGGTGGCTCCAAATAcagcagaagcctgtgtggacaCGTCCTCCAGTGCCACCAAACAAGTGTCCTACAAGACGGAGATCGTCGCAGGAGTGCCCATTATCACAACCACACAGGAAAAGGGTGAAGGTCAGAATGGTGCAGACAAGAGTGGACTAAGGAAACCTCCTGGTCAACTGCCATATTACCTGAGCCGCAGTAACCAAGACCAGTCGGTCATTAAAACTGGATATTGTGTCAAACAGGGAGCTGTGATGAAGAACTGGAAGAGGAGATACTTCATGCTGGATGACAATGCACTCAGCTACTTCAAAACAGACATGGAGCGAGAGCCATTAAAGGTTATCCTTCTGAAAGAAGTGAACAAGGTGCAGGAGTGTAAACAAAGTGACTTGATGATGAGGGACAATCTTTTTGAACTGGTTACTACCACGAGAACTTTCTACATTCAGtcTGACAGCCCTGAAGAGATGCACGGCTGGATAAAGGCTATCTCTGGGGCCATAGTGGCCCAGCGGGGTCCTGGACGCTCAGCAGCATCTATGCGTCAGGCCAGGCGGCTCTCAAACCCTTGTATACAGAGGTATACATCCTGCAATGGTGAATGCAGCAC
>TCONS_00010057
ATGCCGTACGTAGATCGTCAGAACCGGATATGTGGCTTTTTAGACATCGAGGAAATGGAGAACAGTGGCAAGTTTTTACGACGCTACTTTATTCTGGACACGATGGACAGCAGCCTGATGTGGTTCATGGATAACCCTCAGAATCTTCCAGAAGGAACGTCCAATGTCGGCTCAATCAAACTAACATACATATCCAAGGTTTGTCATTTGATCAACGCTGGAATGAGGAAGTTTTACTTGCAGGCCAATGATAAGCAAGATTTAGTGGAGTGGGTCAGTGAGCTGAACAAAGCCACCAAAATCACAGTGCCAAAGTCAGGCGAGCAGGTGGCTCCAAATAcagcagaagcctgtgtggacaCGTCCTCCAGTGCCACCAAACAAGTGTCCTACAAGACGGAGATCGTCGCAGGAGTGCCCATTATCACAACCACACAGGAAAAGGGTGAAGGTCAGAATGGTGCAGACAAGAGTGGACTAAGGAAACCTCCTGGTCAACTGCCATATTACCTGAGCCGCAGTAACCAAGACCAGTCGGTCATTAAAACTGGATATTGTGTCAAACAGGGAGCTGTGATGAAGAACTGGAAGAGGAGATACTTCATGCTGGATGACAATGCACTCAGCTACTTCAAAACAGACATGGAGCGAGAGCCATTAAAGGTTATCCTTCTGAAAGAAGTGAACAAGGTGCAGGAGTGTAAACAAAGTGACTTGATGATGAGGGACAATCTTTTTGAACTGGTTACTACCACGAGAACTTTCTACATTCAGtcTGACAGCCCTGAAGAGATGCACGGCTGGATAAAGGCTATCTCTGGGGCCATAGTGGCCCAGCGGGGTCCTGGACGCTCAGCAGCATCTGTAAGACTCTTATTAACTCACATATCATCAGTTAGATtatga

Function

symbol description
plekha1b Predicted to enable PDZ domain binding activity. Predicted to be active in cytoplasm and membrane. Orthologous to human PLEKHA1 (pleckstrin homology domain containing A1).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110408-54 Predicted to enable PDZ domain binding activity. Predicted to be active in cytoplasm and membrane. Orthologous to human PLEKHA1 (pleckstrin homology domain containing A1).

Ensembl:

ensembl_id ENSDARG00000094504

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010055 False 1390 mRNA 0.49 12 11496740 11593436
TCONS_00010056 False 971 mRNA 0.48 11 11510455 11560794
TCONS_00010057 True 906 mRNA 0.47 10 11512545 11560794

Neighbor

gene id symbol gene type direction distance location
XLOC_005218 htra1b coding downstream 39115 11388724 ~ 11457625 (-)
XLOC_005217 zgc:174164 coding downstream 146841 11315849 ~ 11349899 (-)
XLOC_005216 get4 coding downstream 189974 11262954 ~ 11306766 (-)
XLOC_005215 si:ch73-30l9.1 coding downstream 238336 11244914 ~ 11258404 (-)
XLOC_005214 NA coding downstream 723794 10769131 ~ 10772946 (-)
XLOC_005220 btbd16 coding upstream 8123 11601559 ~ 11649690 (-)
XLOC_005221 atoh1c coding upstream 174678 11768114 ~ 11768889 (-)
XLOC_005222 BX572641.1 coding upstream 741780 12335216 ~ 12335331 (-)
XLOC_005223 ccser2b coding upstream 1361502 12954938 ~ 13081229 (-)
XLOC_005224 NA coding upstream 1509430 13102866 ~ 13106223 (-)
XLOC_005200 NA non-coding downstream 1366838 10124660 ~ 10129902 (-)
XLOC_005199 BX928755.1 non-coding downstream 1433072 10060636 ~ 10063668 (-)
XLOC_005196 AL732629.2 non-coding downstream 1825603 9669927 ~ 9671137 (-)
XLOC_005195 AL732629.1 non-coding downstream 1848395 9648228 ~ 9648345 (-)
XLOC_005237 NA non-coding upstream 2544850 14138286 ~ 14144159 (-)
XLOC_005240 NA non-coding upstream 3246351 14839787 ~ 14840559 (-)
XLOC_005243 NA non-coding upstream 3524451 15117887 ~ 15120113 (-)

Expression


Co-expression Network