Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_005221 |
| gene name | atoh1c |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 11768114 ~ 11768889 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| atoh1c | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cerebellar granule cell differentiation. Predicted to be active in nucleus. Is expressed in brain; midbrain hindbrain boundary neural rod; and midbrain hindbrain boundary neural tube. Orthologous to human ATOH1 (atonal bHLH transcription factor 1). |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0030182 | neuron differentiation | biological_process |
| GO:0042491 | inner ear auditory receptor cell differentiation | biological_process |
| GO:0021707 | cerebellar granule cell differentiation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-090805-1 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cerebellar granule cell differentiation. Predicted to be active in nucleus. Is expressed in brain; midbrain hindbrain boundary neural rod; and midbrain hindbrain boundary neural tube. Orthologous to human ATOH1 (atonal bHLH transcription factor 1). |
| ensembl_id | ENSDARG00000039602 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00010059 | True | 776 | mRNA | 0.48 | 1 | 11768114 | 11768889 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_005220 | btbd16 | coding | downstream | 118424 | 11601559 ~ 11649690 (-) |
| XLOC_005219 | plekha1b | coding | downstream | 174678 | 11496740 ~ 11593436 (-) |
| XLOC_005218 | htra1b | coding | downstream | 310489 | 11388724 ~ 11457625 (-) |
| XLOC_005217 | zgc:174164 | coding | downstream | 418215 | 11315849 ~ 11349899 (-) |
| XLOC_005216 | get4 | coding | downstream | 461348 | 11262954 ~ 11306766 (-) |
| XLOC_005222 | BX572641.1 | coding | upstream | 566327 | 12335216 ~ 12335331 (-) |
| XLOC_005223 | ccser2b | coding | upstream | 1186049 | 12954938 ~ 13081229 (-) |
| XLOC_005224 | NA | coding | upstream | 1333977 | 13102866 ~ 13106223 (-) |
| XLOC_005225 | cxl34c | coding | upstream | 1384295 | 13153184 ~ 13155653 (-) |
| XLOC_005226 | pelo | coding | upstream | 1419727 | 13188616 ~ 13205854 (-) |
| XLOC_005214 | NA | non-coding | downstream | 995168 | 10769131 ~ 10772946 (-) |
| XLOC_005200 | NA | non-coding | downstream | 1638212 | 10124660 ~ 10129902 (-) |
| XLOC_005199 | BX928755.1 | non-coding | downstream | 1704446 | 10060636 ~ 10063668 (-) |
| XLOC_005196 | AL732629.2 | non-coding | downstream | 2096977 | 9669927 ~ 9671137 (-) |
| XLOC_005195 | AL732629.1 | non-coding | downstream | 2119769 | 9648228 ~ 9648345 (-) |
| XLOC_005237 | NA | non-coding | upstream | 2369397 | 14138286 ~ 14144159 (-) |
| XLOC_005240 | NA | non-coding | upstream | 3070898 | 14839787 ~ 14840559 (-) |
| XLOC_005243 | NA | non-coding | upstream | 3348998 | 15117887 ~ 15120113 (-) |
