Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_005222 (BX572641.1)

Basic Information

Item	Value
gene id	XLOC_005222
gene name	BX572641.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007123.7
NCBI id	CM002896.2
chromosome length	49182954
location	12335216 ~ 12335331 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010060
GCTagtagctagctctctgcaacccTCACATAGTTGcccactgaagttaagcagggctgcgcctagTTGGTACATGGATAAGAGACCTCAtgggaaaagctaggttgctgccagaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000106234

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00010060	True	116	rRNA	0.51	1	12335216	12335331

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_005221	atoh1c	coding	downstream	566327	11768114 ~ 11768889 (-)
XLOC_005220	btbd16	coding	downstream	685526	11601559 ~ 11649690 (-)
XLOC_005219	plekha1b	coding	downstream	741780	11496740 ~ 11593436 (-)
XLOC_005218	htra1b	coding	downstream	877591	11388724 ~ 11457625 (-)
XLOC_005217	zgc:174164	coding	downstream	985317	11315849 ~ 11349899 (-)
XLOC_005223	ccser2b	coding	upstream	619607	12954938 ~ 13081229 (-)
XLOC_005224	NA	coding	upstream	767535	13102866 ~ 13106223 (-)
XLOC_005225	cxl34c	coding	upstream	817853	13153184 ~ 13155653 (-)
XLOC_005226	pelo	coding	upstream	853285	13188616 ~ 13205854 (-)
XLOC_005227	emc9	coding	upstream	976608	13311939 ~ 13318969 (-)
XLOC_005214	NA	non-coding	downstream	1562270	10769131 ~ 10772946 (-)
XLOC_005200	NA	non-coding	downstream	2205314	10124660 ~ 10129902 (-)
XLOC_005199	BX928755.1	non-coding	downstream	2271548	10060636 ~ 10063668 (-)
XLOC_005196	AL732629.2	non-coding	downstream	2664079	9669927 ~ 9671137 (-)
XLOC_005195	AL732629.1	non-coding	downstream	2686871	9648228 ~ 9648345 (-)
XLOC_005237	NA	non-coding	upstream	1802955	14138286 ~ 14144159 (-)
XLOC_005240	NA	non-coding	upstream	2504456	14839787 ~ 14840559 (-)
XLOC_005243	NA	non-coding	upstream	2782556	15117887 ~ 15120113 (-)
XLOC_005244	NA	non-coding	upstream	2790078	15125409 ~ 15126049 (-)

Expression

Co-expression Network