XLOC_005227 (emc9)


Basic Information

Item Value
gene id XLOC_005227
gene name emc9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 13311939 ~ 13318969 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010066
AGCACGACCATGACGTCACGAAGAAGAAACAACGCCGCAGTCATCCTCAATGTCCGTTCGCTTTTATGAAGTGTTTATGAAGTAAACagcaaaatatttctgttttaatttgtttgatttaatcagtggatttttttatttgactacTACAAAAGGGAAGAACAATATAAGGaTGGGCGAGGTGGAGCTATCCTGTTTGGCTTATGCCAAGATGTATCTTCATGCCAGTCAGTTTCCACGCTGCAGTGTGAACGGCCTGCTGTTGTCGTCCAGTACAGCAGGGGGAGCCTTATGCATCACAGACTGTGTTCCGCTGCTCCACTCACACCTGTCTCTGGCTCCAATCACACAGCTAGCGCTTACACAGGTCGATGTTTGGTGTTCACAAACACAGCAGAAGATTGTGGGGTATTATCAAGCTAATGCTTGTGTGTCAGACAGCAGCCCTACACCATGTGCTTTGAAAATTGCAGAGAAGATCTTCGAGCAGTGCAACAATGCTGTATTACTCATGATTGATGGAGAAAAGATGTTTCCAGGCTGCCGCGTTCCTCCAATCGTCATGTATGAACGCAAAGACACCCGCTGGGCTCTCAAAGACAAACACACAATAATGCTtcgacagtgggaggaaacctgcTCTATAGTTAATCAGTTGTTCAGCTCTGGCGATCAGGCATTATTGGTGGATTTCGACAGCCATTTGGATGACATCACAAAAGATTGGACCAATCAGAAACTCAATGCCAAGATCATGGAGCTGGTCTCCCCAGCTAATGGAAATGTTTAACAATAAAGACTAAATCAGCtcatataatagttttttttttcaacacaaaagtCTAGTGTTTTTAAGATTTGAAACATTTTCTTACTTTGATCCTGTTACATCTGTCATCTTTAGTCATTTAAGCTATTGATTATttaacatctatctatctgtctaaacattaaataaatatgtaattaaa
>TCONS_00010067
GAAACAACGCCGCAGTCATCCTCAATGTCCGTTCGCTTTTATGAAGTGTTTATGAAGTAAACagcaaaatatttctgttttaatttgtttgatttaatcagtggatttttttatttgactacTACAAAAGGGAAGAACAATATAAGGctttatcttttttttttctcccaagaTGGGCGAGGTGGAGCTATCCTGTTTGGCTTATGCCAAGATGTATCTTCATGCCAGTCAGTTTCCACGCTGCAGTGTGAACGGCCTGCTGTTGTCGTCCAGTACAGCAGGGGGAGCCTTATGCATCACAGACTGTGTTCCGCTGCTCCACTCACACCTGTCTCTGGCTCCAATCACACAGCTAGCGCTTACACAGGTCGATGTTTGGTGTTCACAAACACAGCAGAAGATTGTGGGGTATTATCAAGCTAATGCTTGTGTGTCAGACAGCAGCCCTACACCATGTGCTTTGAAAATTGCAGAGAAGATCTTCGAGCAGTGCAACAATGCTGTATTACTCATGATTGATGGAGAAAAGATGTTTCCAGGCTGCCGCGTTCCTCCAATCGTCATGTATGAACGCAAAGACACCCGCTGGGCTCTCAAAGACAAACACACAATAATGCTtcgacagtgggaggaaacctgcTCTATAGTTAATCAGTTGTTCAGCTCTGGCGATCAGGCATTATTGGTGGATTTCGACAGCCATTTGGATGACATCACAAAAGATTGGACCAATCAGAAACTCAATGCCAAGATCATGGAGCTGGTCTCCCCAGCTAATGGAAATGTTTAACAATAAAGACTAAATCAGCt

Function

symbol description
emc9 Predicted to be part of EMC complex. Orthologous to human EMC9 (ER membrane protein complex subunit 9).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-693 Predicted to be part of EMC complex. Orthologous to human EMC9 (ER membrane protein complex subunit 9).

Ensembl:

ensembl_id ENSDARG00000034633

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010066 False 971 mRNA 0.41 6 13311939 13318969
TCONS_00010067 True 810 mRNA 0.44 6 13312100 13318944

Neighbor

gene id symbol gene type direction distance location
XLOC_005226 pelo coding downstream 106085 13188616 ~ 13205854 (-)
XLOC_005225 cxl34c coding downstream 156286 13153184 ~ 13155653 (-)
XLOC_005224 NA coding downstream 205716 13102866 ~ 13106223 (-)
XLOC_005223 ccser2b coding downstream 230710 12954938 ~ 13081229 (-)
XLOC_005222 BX572641.1 coding downstream 976608 12335216 ~ 12335331 (-)
XLOC_005228 lsm5 coding upstream 12557 13331526 ~ 13337037 (-)
XLOC_005229 ghdc coding upstream 208453 13527422 ~ 13549538 (-)
XLOC_005230 CR354395.2 coding upstream 234761 13553730 ~ 13556536 (-)
XLOC_005231 stat5b coding upstream 241113 13560082 ~ 13650472 (-)
XLOC_005232 foxh1 coding upstream 403416 13722385 ~ 13730501 (-)
XLOC_005214 NA non-coding downstream 2538993 10769131 ~ 10772946 (-)
XLOC_005200 NA non-coding downstream 3182037 10124660 ~ 10129902 (-)
XLOC_005199 BX928755.1 non-coding downstream 3248271 10060636 ~ 10063668 (-)
XLOC_005237 NA non-coding upstream 819317 14138286 ~ 14144159 (-)
XLOC_005240 NA non-coding upstream 1520818 14839787 ~ 14840559 (-)
XLOC_005243 NA non-coding upstream 1798918 15117887 ~ 15120113 (-)
XLOC_005244 NA non-coding upstream 1806440 15125409 ~ 15126049 (-)
XLOC_005246 NA non-coding upstream 1923598 15242567 ~ 15244000 (-)

Expression


Co-expression Network