XLOC_005229 (ghdc)


Basic Information

Item Value
gene id XLOC_005229
gene name ghdc
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 13527422 ~ 13549538 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010072
AAAGAAGAAGTTGTTGTGTGTTTGCTTTCGGTTTTCCGTCTACCAAGATGCACACATATCGTTTGTGGGTCATTTTACCAATTTGTATTGCGTTGTTGGCCGTGACAGCAGCATGTGCTCCTGTGGGCTTACTTCCTCTATGTCTCTGTACTATGGCTCTTCTGTGGAAGATAAAGATCGAGAATCGCTCCCTATTGAGTCTTTTGACTCAGTATGTGGCTATGAAATCAGTGGGCTGGCTGGGGAATCGCCAAAGAAACAGAATGGAGAAGGACACCCAGGAAATTCGTCGCGTTCAGGAGGAAACGCTGCTCAGGCGCCTGCGCAAACACTCAGACACAGTCTACGGCAAACTATACGACTTCAGCTCGATTAAAGACACTGAAACATTTAAACAGCGTCATCCGGTCACAAATTATGATCATTATGAAAAGTTTGTGGATCGTGTGGCTAAAGGAGAGCAGAAGGTTTTAATATCGGAGAGTCCTCTAATTTTGGCTATGACATCAGGAACGTCTGGATCCAGCCGTATGCTTCTGAGCACCAAAGACACTAACACAGACTTCTTCCTACAGGGGGTTACTGTTTGTCTAGATGTCATGAGACGAGCCTTTCCAGCCACCGAATGTCTTCAGAAAACCCTGAAACTCTTTTACTCTCCTCTCATTCGTCAAAGTGAGGCAGGTATTCCCATCGGCCCCAACTCCTCGACCCCTGCATCCTCTAGACACATGCTCCATCTGTACACCACACCAGCGCTTGTCTATCAGGTGCCTTATGAGAGGGATGCTTTGTATCTCCATCTGTTGTTTGGGTTGAAGGATCGCAATCTTGGCATGCTGGAATCAAACTTCTGCTCAACCATCTTTTATGCCTTCAGAGCTCTTGAGGAACATTGGAGAGATCTTGTTATGGATGTGGAAGTGGGCATGATCAGCTCTGCTCTAAACCTAGAGGCTGATGTGCGCTGTGCTTTAGAAAAGCTGATGAAGCCGGATCCAGAGAGAGCTGCTGAACTCACAGCTCAGTTTGAGGAAGGATTTGAGGGAATTGCTCTCAGATTATGGCCTCAGTTACACCTGGTCCTGGCAGTAGACTCGGGTTCCAATCAGATTTATGGGGAGATGTTACGGCAACACTACTGTAAAGATGTGCCATTCTACTCCCCTTTCTATGCTGCAACTGAAGGATTGATAGGTGTGAACCTGTGGCCTCTGCAGGAGAGAAGACAGTATCTGTTGTGTCCTCGCTCCATGTTCTGTGAGTTCATACCAGAGGAGGATCTGGAGTCAGATCAGCCCAAAACTCTCCTGATGGAGCAACTTAAGGAAGGACACAGCTATGAGCTGCTAGTCACCAATGCATCTGGATTATTTAGGTATCGCATTGGAGATATTGTTAAAGTAGTTGGGTTTCATAACCAGTGTCCAAAAGTGGAGTTTCAGTACAGGCGTGGTCAGATGTTGAACGTTCGTGGTGAAAAAGTGTCTGAATCACTGTTTTTGGGAGCTCTTAAGCGGGCTGTGATGCAGTGGCCAGGAGCCAGACTCATAGACTACAGCTGTGTCGAGAGTGGCATTCTAGGAAATGCATCTGGAATTGCTCAACCTCATTATCTTGTGTTTGTTGAGCTAAAGGGTTTGAGAAACCTCTCAGAGGAACAAAGATACAAGTTAGACCAGTCCCTGCAGGAGGACTCTTCCATCTACAAATCCTATAGGATCAAGGGCAGCATTGGACCAATGAGAGTTCAGCTTGTCCGCAATGGCACTTTCAAAGAACTGAAAGATCACATGATGGCATTCTCTAGTGTTTCGTCTAACACCTTCAAAATGCAGCGTGTGATACGCAGGAAAGAATTTGCTGACTTTCTACTGCAGAGGGCATTATGAGCATTTCAATTCGAAAATATTTTGTTGCATACTAGTTTTATATATACAAAGAGTGGTAAATAATACATTGGTGGGTCGATTCATCTAAAAAGACTGTGATTGCTGTGTTTAAGTGTTTGGACCTGCCATTCACAATATTTGGTCAACCAGTAGCATGAGTTGGAAATACGTGTTTGTCCAAGTCGTACAGGCGAGAAACATGATAGCAGAACTGCTTGTTGTTACTAGAACAATGGTTCTTAATGGTGGAGGACTACAGTactgcacattttaaatgtgttcatCATTAGAAAATGGTTGGATTAGCTACCAAAAAAGTCTATTTATTAggttgtttttgtaaaaatattgCAGGTATTTataacaagaaaaataaaattatgtattaaacaccataattaaaaaatatatatgatcgAATGCATCCATtcctgttatttattaatttaaaaccaGTGGGGATGGTATTCTAATAAAATGCATATGTTGTAACATCCAGTTCTCTCACTTAAGCTCccatttttatgtaatatttttatgatttttaaattaaagtatttattttattcatcctATTTCATCCCGTATTACCTGTGAACCTTTCCCCAATAAACTATATTATCCATATTTATATACCTA

Function

symbol description
ghdc Predicted to enable acid-amino acid ligase activity. Predicted to be active in cytoplasm. Is expressed in proliferative region. Orthologous to human GHDC (GH3 domain containing).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-165 Predicted to enable acid-amino acid ligase activity. Predicted to be active in cytoplasm. Is expressed in proliferative region. Orthologous to human GHDC (GH3 domain containing).

Ensembl:

ensembl_id ENSDARG00000055569

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010072 True 2531 mRNA 0.42 11 13527422 13549538

Neighbor

gene id symbol gene type direction distance location
XLOC_005228 lsm5 coding downstream 190385 13331526 ~ 13337037 (-)
XLOC_005227 emc9 coding downstream 208453 13311939 ~ 13318969 (-)
XLOC_005226 pelo coding downstream 321568 13188616 ~ 13205854 (-)
XLOC_005225 cxl34c coding downstream 371769 13153184 ~ 13155653 (-)
XLOC_005224 NA coding downstream 421199 13102866 ~ 13106223 (-)
XLOC_005230 CR354395.2 coding upstream 4192 13553730 ~ 13556536 (-)
XLOC_005231 stat5b coding upstream 10544 13560082 ~ 13650472 (-)
XLOC_005232 foxh1 coding upstream 172847 13722385 ~ 13730501 (-)
XLOC_005233 adam11 coding upstream 262093 13811631 ~ 13886952 (-)
XLOC_005234 dbf4b coding upstream 339132 13888670 ~ 13905307 (-)
XLOC_005222 BX572641.1 non-coding downstream 1192091 12335216 ~ 12335331 (-)
XLOC_005214 NA non-coding downstream 2754476 10769131 ~ 10772946 (-)
XLOC_005200 NA non-coding downstream 3397520 10124660 ~ 10129902 (-)
XLOC_005199 BX928755.1 non-coding downstream 3463754 10060636 ~ 10063668 (-)
XLOC_005237 NA non-coding upstream 588748 14138286 ~ 14144159 (-)
XLOC_005240 NA non-coding upstream 1290249 14839787 ~ 14840559 (-)
XLOC_005243 NA non-coding upstream 1568349 15117887 ~ 15120113 (-)
XLOC_005244 NA non-coding upstream 1575871 15125409 ~ 15126049 (-)
XLOC_005246 NA non-coding upstream 1693029 15242567 ~ 15244000 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location