XLOC_005237


Basic Information

Item Value
gene id XLOC_005237
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 14138286 ~ 14144159 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010086
ACGGTCATTTTAATCATTATAGGCTACTGTATGTTTTGACCCTCCCCAagagattaaataaaatagttaattcatTTTAAGACAGGAATTCACGCATCTACATCACATTTAAAAGGAAACAAATAGACTGTCTAACGTTTGAGTGaaggcaaagagcttagaatgtgATTCTAATAAGCTCTTTGAGTTATCTTATATTTCATTTTAGCCATTTCAATAAAAGCATTTTTCGGTAGATGGCAGCATTTTCCCACTAATTTACAGCGCATTATGCCCATGAGCGAAATTTAAATAGACCTACCCTTAAAAATTCCTTAAAGTTATTAACTTtgcattaatttacattaaaaccttttgaataaagtataaaaaaaaactagtgattaaatttagttttaattgatTTACTCTTTTTAAACCCATATTTGACAAATAGGCCTACATGTATCAAAACAGCTACTAGCTGTAGTAAATAGTGTACGCACGTTTACAACTCTTGGTTAATTTACTATACTGAATCTATGTTATCATAAACGGATAAACTACTTATGTAGTAGTAGGCTACTCTTAGGTTTTACTTGCGTCACGTTTAATTAAAAACACACTTCCGCAAAGGATACATCCCTGCTCATCACTACTGAAAAAGCCTCTCTCTAGACAGCAGAGGTTGATGTCTTGTAGAGTTGATGACCCGCTTTTTGGGTCGCAGTCGGAGGAGCTAGGTAATGAGGAAGCATAGCCCATTGAGAGCGGGACTGTCTGATCAGGTGCTGCCTTTACGTTGATTAACACTAATTGCATGCCATTCAATTAACTGATCTAGTTGGACATGGTTTTTCCTATCGCTCACAACACACTCCTGATTTACACTTTAGGAAAGCTGTGAATTAGTTTTTGTTTGAGGTCTTGTTGGTTTGTGAATTTTGTTGAGAAATTCAAGGGATGGCTGCTATATCTACTCATGAACCCATTGGTGGTTTGTCAGGCGTTCTTAGTGAACCACTGCATGCACAGGCCCCTCTATGCGCTGGTCCTCTGCCCTCCAGAATACTACACCCAGATGAGCAGCTTCAGCTAAACCAGCAATTTTATGTTCCCACTGTTCAGCCTTTCATGCCCTATCAGTTTCCTACATCATCTCTATGTGTGCCATACAGTGGATTTCATGGCTTAGGGTATAGTGTGATGCCACTACAACTTCCATCATGTGTTGAAGTCCCTGGATTCATAACACCTCAACTGCAAATGTTGGACTACAGACGTATAACCCCTCATGTGGCTCCAGCTACTGCCCACCGGACCCGCCACTCCAATTTCCAAAACCCTGTGCCACTTGGTCCTGTGATGGTCAACTCAGAGGTGCAAACTGAACCTATTTGTCATAGCATAGGCTCACATGGACCTGCAGCGAGATCAGACACCTGTTCAGAATCAGGTCGTGGTACTGGCTGTGATAGTCCAGTGTCAACAACACCCAGGTCCACTGAGAACAAATCCATAGCTTGCCCTGAAGGTGTGTCTGTGCTCACTCAAAATTGCAACACCAGTGCTACTGAGACCACTGATTTGTCTACTGTACCCAAAAGTGAAATCATCCAAGCTGAACAGGTGCAGAGCAAATGTGGTGTATTGCTGTCTAAGCATGAGATTATTCAGAACAAGAACAATAAGATGGCAAGTTataacaaaaatgacattatgCAGTGCAGTTTGGGATCTGTGCAATCTTCAGAGGATGTTGTGGTGTGTTCTTACCGGTCATTAGCATTCAGGGAGGATAAACAGAGGGTTGAAGCTGGGATGTTAAGTTATTCCAGAAAGCATCATCTAACATCTTGCACAGAACTTAATGTTTTGAGAACTCCGTCTtgtaccttaaaaaaaatttctaaacCAAGCAAATCGGTCATTGCACAATGTGTTAAAGTAAAAAACAACTCCGAGACACAATTTCAGACAAAGGACAAGGATGATGGAAATTCtcctaataataattttaagattCTCCGACTGCCATTTGATGTGCAGAACCATAAACTGCCTTGTCAGCTTGATGCTTCTATCTGGTCGGTAGAGTCTCTGTTACCATATGTGCCATCCAGTGAGTGGCTGGCAGAAAATGGTCTTCTAACCCCTCAGAAAACCTTAAGCTCACTGACTAAACCCAGTAATGTTATATCAAAGCCATACTGTGTTTCTGTGGGGAAAAATTTACAAAGTGGTCCATCAGCAAAATATTGTGTTTCTCCACATCAGTTAGAGGCTTCGATCTGGTCCATAGATTCTTTGATGCCATATGTGCCTTCAAATGAGTGGATGGTTGAGAATGGGTTTTCAACGCCTCAAAAAGGTGTGAGCCCACAGATTAAATCCAGTGATGGTCATTCTTCCACTGATGGCATTCCTTTAAGGAAAAATCTGCAAGCATGTGGATCAACTAAATATCATGGTGTTTCCCATCAGTTAGAGGCTTCGATCTGGTCTGTAGATTCTTTGATCCCATATGTGCCTCCCAATGAGTTGATGGTTGATAATGGGTTTTCAACACCTCAAAAATCCGTTAGTCCACAGATTAAATCCAGTGATGGTGATTTTTCCACTGATGGCATTCCTTTAAGGAAAAATCTGCAAACATGTGGATCAACTAAATATCACCGTGTTTCCCATCAGTTAGAAGCTTCAATCTGGTCTGTAGATTCTTTGATGCCTTATGTGCCTTCCAATGAGTTGATGGTTGATAATGGGTTTTCAACGCCTCAAAAAGGCATTAGCCCACAGATAAAATCCAGTGATGGTTATTCTTCCACTGATGGCATTCCTTTAAAGAAAAATCTGCAAACATGTGGATCAGCAAAATATCATGGTGTTTCCCATCAGTTAGAGGCTTCTATCTGGTCAGTAGAATCTTTGAAGCCGTATGTACCTTCTAATGGATATATGGTTGATAATGGGTATTTAACTTCTCATCAAGCTCTGAGCCCACCGTTTAAATCCAGTAATGTTGTGTCAGAGCCGAATCAGACTTCCAGTGATCATTTTCAAGTAGGGGAGAGGCTACAAACTTGTGCATCTGCTAAACTTAAGGGGTCCATTAAGTCACTCGAAAAACGCTCCCCTTACCGTCCCTCATCGAGCTGGCTGGCTGATTTTGGTAATGTATACTACTACAGTAAGTTACCCCCTGTTCAGCAACAGTCTGAGATTCTGGAGAGATGGCAGCCAAAAGTGTCCCTTACCACTCATCTTGAACCatctttcattaatttaaaaaagaccAGAAACCAAACTCCAGCAACTGGTATCTCAGACCAGAAGCACTGCGTATCTAATAAATGCAAGTGCAAAGTCAAAAGAAGTCCAAGGCTTTCTTGTGTCACACTTGAAAGTAAATTACCTTTGTGCCAATCATGTCGATATGACACCAAAGGAAAAGATTCAAAAAAGCATTCAGATTGTCCTGGCTGCAAAAAAGAAGACTATGTTGAAGTTAAGACTTTTGACAAGATCTCCAACGAGGGTGTCCTTGATGCCAAAAACATGGCATTGGGAAATCTTTTGCCAGAATGCTGTGGTGCCGCTCGGGTGGAATTAAGACAACAGACTGCACTGACCAGCCCTGCTCAAGATAAATGTGGAGACCTTGAATGGAGACTTTGGGAAAAGAAGAAAGATTTTATGAACCAGAATAAGAGTCAGATATGGAGTCTACAGAAAGAAAATGCAGCAAAAGAATCAATGCAGGCGTCTATTTCTGTAAGAAGGATTGAGAACAAAGAAAGCATGCTCACAAGaaaTCGCACTAGAGGGGAACATGTCACTGGCCGTGAATAGGCAATGTGAGCACACCCTGGATGGTGTTAAGCGACATTAAAATCACAAATCCACCCTTTTATCATTTGAATACTACAGTGCACTTGTATATTTATGCTCTAAATTAATAAAGTGTTTACCACCAACATGCTGCATATAGcctatgtaaaaataaataaatgtagaacaCATCAAatgtt

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0007017 microtubule-based process biological_process
GO:0007049 cell cycle biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010086 True 4010 lncRNA 0.40 5 14138286 14144159

Neighbor

gene id symbol gene type direction distance location
XLOC_005236 aclyb coding downstream 60216 13973058 ~ 14078070 (-)
XLOC_005235 klhl11 coding downstream 172102 13961268 ~ 13966184 (-)
XLOC_005234 dbf4b coding downstream 232979 13888670 ~ 13905307 (-)
XLOC_005233 adam11 coding downstream 251334 13811631 ~ 13886952 (-)
XLOC_005232 foxh1 coding downstream 407785 13722385 ~ 13730501 (-)
XLOC_005238 avl9 coding upstream 21877 14166036 ~ 14211293 (-)
XLOC_005239 FO704673.1 coding upstream 401316 14545475 ~ 14551077 (-)
XLOC_005240 NA coding upstream 695628 14839787 ~ 14840559 (-)
XLOC_005241 neurod2 coding upstream 775929 14920088 ~ 14922955 (-)
XLOC_005242 pkmyt1 coding upstream 821428 14965587 ~ 15002619 (-)
XLOC_005224 NA non-coding downstream 1032063 13102866 ~ 13106223 (-)
XLOC_005222 BX572641.1 non-coding downstream 1802955 12335216 ~ 12335331 (-)
XLOC_005214 NA non-coding downstream 3365340 10769131 ~ 10772946 (-)
XLOC_005200 NA non-coding downstream 4008384 10124660 ~ 10129902 (-)
XLOC_005199 BX928755.1 non-coding downstream 4074618 10060636 ~ 10063668 (-)
XLOC_005243 NA non-coding upstream 973728 15117887 ~ 15120113 (-)
XLOC_005244 NA non-coding upstream 981250 15125409 ~ 15126049 (-)
XLOC_005246 NA non-coding upstream 1098408 15242567 ~ 15244000 (-)
XLOC_005247 NA non-coding upstream 1301415 15445574 ~ 15450258 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000161_00949785_00955153 NA coding CI01000161 null 947517 ~ 955229 (+)