XLOC_005238 (avl9)


Basic Information

Item Value
gene id XLOC_005238
gene name avl9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 14166036 ~ 14211293 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010087
CGCGAGGATAGGACTATTGCCTACTTTAAACAGTTGTAAAATAACTGCTGGAATATACACGGaggttttttttattctatttcagTTGGTCCTTTTATTAGTATTAAAAGAATGTAGTGCCCTATTTATGGGAATGAAATGAAACGAAAAGGTGCTTCACCTCACTACGGCCTACAGCTGAGCATATGTCTGCTATTATTTGTTTTCGCTAGAGGCGGAGCATCGGAACATACAAATTTACTGACAAGGGTGCGGAAGTTACAGACCTAACACATTAAAGCCACATTATACTCTTCGTTTTTTATTATTTGGAATAATTAGCGCTGATGGAGTGTCAGAGTAAAGAGGAACCCGTGCTGCACATTGTAGTGGTAGGATTTCACCACAAAAAAGGGTGTCAGgtAGAATTCTCGTATCCTCCAATCATTCCTAGTGCGGGTCATGACAGTAGTACACTCCCAGAAGAATGGAAGTACCTGCCTTTCCTGGCACTGCCTGATGGAGCACACAATCATCAGGAGGacACTGTTTACTTTCATTTGCCTCCTCTGGATGGACAGCTCAAATGCGTTTATGGAGTTTCTTGCTACAGACAGATGGAGGCTAAGGCACTAAAAAAACGGGAGGCAGATGTCACAAGAGAGACTGTTCAGAAGAGTGTATGCGTTCTCAGTCGACTGcCACTCTTTGGTTTGATACAGGCCAAACTTCAGCTCATAACTCATGCATACTTTGAAGAAAAAGATTTCTCCCAGATCTCCATCCTAAAGGAGCTTTATGATCATATGAACAGATCTTTAAACTGTACATCGCTGGAGGGATCACAGATTTATCTAAGTCTGTCTGCCAGAGATTTAATTTTGCACTTTAAACACAAGGTTCTTGTTCTCTTTAAGCTGATACTGCTTGAAAAGAAGATCCTGTTTTATGTGACTCCAGTGAAAAGATTGGTTGAAACTCTGATGACCATCCTGTCATTGTTTCCAGgTATGATAGAGTACGGGCTGGCAGATTCCTCTCACTATCAGACCCGAAGGAGCATCTCAGAGGATTTCAGTTCACCAGAAATCATATCTGCAGATGAAGAATCACTATCCTTGTTTTCTACTGATATTACTCGTACACCAAAAGAGAATGAGCACAGGTATGATGTCAATGATCCACCAGATCAATCAAAGCCTTGTAATTCTACTTTGGACACACACTACATTGATGCTCGTGCAGAACAACAGAACTTGCTGGACAGCTCTGAGAGTGAATGGGAAACTCTGGAGCCTCATGTGATGGATGAAAAGGAAAGTAAAATGGACATTGGCCATTTAGAGATGTTTGACGCTGATTCCGGACTGCCAATAACAGTACAGCCACAGTCAGCCACAGGACATGGAACACTATCCACAGGCCTGGTATCTGGATTGCAAGAGGACCAGTATGGACAGCCACTCGCTATCTTTACAAAGGGTTACCTGTGCATGCCTTACATGGCACTCCAACAGCACCACCTGCTGTCAGACATAAATGTTCGGGGTTTTGTTTCTGGAGCAACTAACGTCCTCTTTCGACAGCAGCGCCACCTAAGTGATGCTGTTGTAGATGTGGATGAAGCCCAAATTTTGATCCATGACCCAGAGCTGCGCAAAATGCTAAATTTAAGCACAGCAGATCTGAGATTTGCTGATTATCTGGTGAAACATGTCACTGAAAACAAAGAGGATGTGTTTCTGGATGGTACAGGTTGGGAGGGTGGAGATGAGTGGATACGGGCACAGTTTGGCCTGTATATGCATTCACTGTTATCTTCTGCTCTACAACAAGatcATGAGCGGCTGTTGGCAGATTATGGAGTTTTGTTCACATCTGCTTGGAAAATGACACACAACTACAAAATGTGGATCAGCAACAAGCATCCAGCCATGGCCGAGATTACACCTGGACATCCATTCCAGGGTCAATACAGTGTGGCCGATGTGAAGATTCGCTTGTCGCATTCAATGCAGAACAGTGAGCGTGGAAAGAAGATTGGGAATGCTGTGATGTCAACGAGCAGAAGTGTTGTGCAAACAGGAAAGGCTGTCGGTCAGTCGGTAGGTGGAGCTTTGACTGTTGCTAAATCAGCCATGTCATCCTGGTTCTCCATGCTGGCTCAGCCGACCGCAGCAGTCACTTCTTCTCAGCAGTCTTCAGACTgatatttactactgtatttaatACTAAAGACAATACTGCTTCTGACATTGCACACATCTCTGTTGTTATATTGTATGAAGATGTATTTTATAGAGAATGAGAAAAAcgtttataatattaattttagatTTAGTACTTAATGTAAaagtttaatgtttatatatgctggaataatgtattttttttggtTCCTGTGACATGTTTCCATGGTGTGTTAATGGGTTTCTCACCTttgaaaatgaaatgtattttctgAGATCAGGTAAccaaattttttatttgtatttttcccCTATACaaacaggatatatatatatatatgtcaagtctttattttgatggtccatttgttgaatttaagttacattgcatctacatggcaacaaattctcattagattatataaGTAGACTGGCTGGGGTTAGGGTTAGCGTAAGTTGACGTAATTGCAAAGTTTCTCATAGTAAATTAAATCTTAAAGGAGCACTATCAACAgatgttaagcagacagtctaatactcaaatggaccatcaaaataaagtgttatcaaataTTGTGATCATTAATCAGACTGTGgcttttgtaaataattttactTATTTGGGATTGGATCAGTTCTTGTAACacaaaaatgtaataacaaattaaggtcccactttatatttggCACCTTCAGTGTACTTACATGGTTAGAAACAAGAGTGTTATGTCTATGTTGtaatgcaaaatgttttttttttaattctagaaAGATCAATTTGTTAAAATTTCTATCAGGTTTAGAGGGACATTTTGCCTTTAACATTGTAATATTTCATAAAACAGCACTGTTTTTCCTCCTGTAATTAAGGTAATTCCTGTACTTGAAGGGACTTTTGATTTGATTATTGTTCTTATGTGGCAAAATCTCTccatgttattaaaaaaatgaaattacacTTAATAAATCTCTGGTGTGTTCAA
>TCONS_00010088
AACATACAAATTTACTGACAAGGGTGCGGAAGTTACAGACCTAACACATTAAAGCCACATTATACTCTTCGTTTTTTATTATTTGGAATAATTAGCGCTGATGGAGTGTCAGAGTAAAGAGGAACCCGTGCTGCACATTGTAGTGGTAGGATTTCACCACAAAAAAGGGTGTCAGgtAGAATTCTCGTATCCTCCAATCATTCCTAGTGCGGGTCATGACAGTAGTACACTCCCAGAAGAATGGAAGTACCTGCCTTTCCTGGCACTGCCTGATGGAGCACACAATCATCAGGAGGacACTGTTTACTTTCATTTGCCTCCTCTGGATGGACAGCTCAAATGCGTTTATGGAGTTTCTTGCTACAGACAGATGGAGGCTAAGGCACTAAAAAAACGGGAGGCAGATGTCACAAGAGAGACTGTTCAGAAGAGTGTATGCGTTCTCAGTCGACTGcCACTCTTTGGTTTGATACAGGCCAAACTTCAGCTCATAACTCATGCATACTTTGAAGAAAAAGATTTCTCCCAGATCTCCATCCTAAAGGAGCTTTATGATCATATGAACAGATCTTTAAACTGTACATCGCTGGAGGGATCACAGATTTATCTAAGTCTGTCTGCCAGAGATTTAATTTTGCACTTTAAACACAAGGTTCTTGTTCTCTTTAAGCTGATACTGCTTGAAAAGAAGATCCTGTTTTATGTGACTCCAGTGAAAAGATTGGTTGAAACTCTGATGACCATCCTGTCATTGTTTCCAGgTATGATAGAGTACGGGCTGGCAGATTCCTCTCACTATCAGACCCGAAGGAGCATCTCAGAGGATTTCAGTTCACCAGAAATCATATCTGCAGATGAAGAATCACTATCCTTGTTTTCTACTGATATTACTCGTACACCAAAAGAGAATGAGCACAGGTATGATGTCAATGATCCACCAGATCAATCAAAGCCTTGTAATTCTACTTTGGACACACACTACATTGATGCTCGTGCAGAACAACAGAACTTGCTGGACAGCTCTGAGAGTGAATGGGAAACTCTGGAGCCTCATGTGATGGATGAAAAGGAAAGTAAAATGGACATTGGCCATTTAGAGATGTTTGACGCTGATTCCGGACTGCCAATAACAGTACAGCCACAGTCAGCCACAGGACATGGAACACTATCCACAGGCCTGGTATCTGGATTGCAAGAGGACCAGTATGGACAGCCACTCGCTATCTTTACAAAGGGTTACCTGTGCATGCCTTACATGGCACTCCAACAGCACCACCTGCTGTCAGACATAAATGTTCGGGGTTTTGTTTCTGGAGCAACTAACGTCCTCTTTCGACAGCAGCGCCACCTAAGTGATGCTGTTGTAGATGTGAGTCTATGAACCTTTTGTCTTTTGTCTATGTATGTCCTAAATGTACAGGCCAACATGTGGAATTTTATGCTGATAAGTTTGTTGAGAATGTGTGCAGCTCATATTTCACCAAATTGAAGTTAGTTTTTCTTCATGAATTGTGACATGCTAGTCATAAAGATGTGTCCTCCAGATTCCCATGACTGCAATGCATCAGTAAGttttactttttacattcagtTTAGGCACATATTCACCCCCACCTCTATTcaatatgaatttatattttttatttaaaaatataataaattgccGAACTGATACTTTCTTTTATGAAA

Function

symbol description
avl9 Predicted to be located in recycling endosome. Predicted to be active in cytoplasm. Orthologous to human AVL9 (AVL9 cell migration associated).

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-261 Predicted to be located in recycling endosome. Predicted to be active in cytoplasm. Orthologous to human AVL9 (AVL9 cell migration associated).

Ensembl:

ensembl_id ENSDARG00000055538

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010087 False 3151 mRNA 0.39 16 14166036 14211293
TCONS_00010088 True 1689 mRNA 0.41 11 14184465 14211067

Neighbor

gene id symbol gene type direction distance location
XLOC_005237 NA coding downstream 21877 14138286 ~ 14144159 (-)
XLOC_005236 aclyb coding downstream 87966 13973058 ~ 14078070 (-)
XLOC_005235 klhl11 coding downstream 199852 13961268 ~ 13966184 (-)
XLOC_005234 dbf4b coding downstream 260729 13888670 ~ 13905307 (-)
XLOC_005233 adam11 coding downstream 279084 13811631 ~ 13886952 (-)
XLOC_005239 FO704673.1 coding upstream 334182 14545475 ~ 14551077 (-)
XLOC_005240 NA coding upstream 628494 14839787 ~ 14840559 (-)
XLOC_005241 neurod2 coding upstream 708795 14920088 ~ 14922955 (-)
XLOC_005242 pkmyt1 coding upstream 754294 14965587 ~ 15002619 (-)
XLOC_005243 NA coding upstream 906594 15117887 ~ 15120113 (-)
XLOC_005224 NA non-coding downstream 1059813 13102866 ~ 13106223 (-)
XLOC_005222 BX572641.1 non-coding downstream 1830705 12335216 ~ 12335331 (-)
XLOC_005214 NA non-coding downstream 3393090 10769131 ~ 10772946 (-)
XLOC_005200 NA non-coding downstream 4036134 10124660 ~ 10129902 (-)
XLOC_005244 NA non-coding upstream 914116 15125409 ~ 15126049 (-)
XLOC_005246 NA non-coding upstream 1031274 15242567 ~ 15244000 (-)
XLOC_005247 NA non-coding upstream 1234281 15445574 ~ 15450258 (-)

Expression


Co-expression Network