XLOC_005242 (pkmyt1)


Basic Information

Item Value
gene id XLOC_005242
gene name pkmyt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 14965587 ~ 15002619 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010091
attgtttttaaagagttTGAAAGTACGTGGCGCCTTTATTgtctttattaattataatatacttGCGTGATTAACAATAAGCTAACGTTATGCCAGAATATAAACCCGGATCAACACCATAGGTTATAGGTTGATGTGGAGATTCTGCATGTGAAGTCCGCTTTTACAGTTTCTTAATTCGAAACAAGTTTGTTGATGCTCTAGTACTTCAGAAGGTTTGATTGTGCATTTCCTATGTCGACATCCCATCAAACACCTGTGGTTAGCAGCACCCCTCTCCCACTGCCTACCCACTTCTCTAATGCTCAGCATTCTATTACTGTTAAGAAAAGAAAACCTCCCTTTTCTAACTTATCAGATTCCTCTCAGTCTCCTTCCCCACCATTATATCATAGTTTACCACCTCGGCCTCCATCTAAAGGATGCTCCCCAGTAAGTCGAGTGTTTCCTCATCGCTCCATTCAGTGGACACCTCTGTCACGCTCCCTTATAGAATCACCCCCTCCTCTCTCTGTGTATGACCCATCTCAACAACAGTCCTTTTTCAGCCAGTGCTTTACCAACCTGGGCCTGATTGGACGTGGTTCCTTTGGTGAGGTTTTTAAGGTGGTGAGTCTTACAGACAATTGTCAGTATGCTGTGAAGCGTTCTGTTCATCGTTTTCGTAGTGAGGTTGAACGAGCAAAAAGCATCACAGAGGCTTGGAATCATGAGGAACTTCACCCACATCCTTACATTCTGGGTTTTATTGCGGCTTGGGAGGAGGCCGGCCATCTCTACATACAGACTGAACTCTGCTGTACCAGTCTACTGCTATATGCCGAGGAAACACCATGTCACACTGGTGAGATGAGAGCTTGGGCATACCTGTGCGACATGCTGTCAGCACTAATTCACTTACATGACTGTGGGTTTGCTCATCTGGACATTAAACCCGCAAACTTTTTCATTACAAAGTCTGGACGGCTCAAACTGGGAGACTTTGGCTTGTTGATCAAGCTTCCTGCAAATGCTCAAAAACAAGTAAACGAGGAAAAGAGAGAaatgaaaaaagagagagatgatTTACAGGAAGGTGACCCAAGATATATGGCCCCCGAGCTATTGAGAGGAGACTATGGGACTGCTGCAGACATCTTTAGTTTGGGTATTTCTATCCTGGAGTTGGCCTGTAACATTGAGGTTCCTAAAGAAGGAGATGACTGGCAGCTGCTCCGAAACGGGCACTTACCAGAAGAATTCACTAATGTGCTTTCTGAAGAAATGCTGTATATACTACGACTTATGCTAACCCCAGAACCCTGCAACAGAGCCACTGCACAGCAGCTGCTCTCTTTGCCCTTTGTACGCAAACACAAGTGGAAACGGCATCTTTATCTTTGCATCATTGAGAGCTTCCTGACCTTATTTCAGTGGAGTCAGTCCCTTTTTTATGGTAGTTGGAATTTTATATCCTCTCTCAGTCTGCTGTTTAAGACCCCTGTCTCTGAGTCGTCCTTATCAACCAGTACTCCTCCAAGAGAGAGATGGGAGAGAGATGCAGACATAAGCAACATTCAGTCATACTCGGAAAGCCCCATTCATCACTGTGTGTTCCCTCCAGATGTTTCTGAACACTCACCAACCTACACGCACAGAGTCCAGTCAAGGCTATCTTCTGGGAGTACTTCTACTCTACTTCCCGAATCAGACAATGATGTCATAGATGCATCATCACACAACCAGTGCATACCCTCTCCCCCCAGAAGCCattacagcagcagcagcagcttgaTTCATAACAAACTCACAGACTCACTGTGTATCCATGAAAGAGACACTGAACTGTCTAAAAGAAACTTTGAGCCAAAGAACTTGCTAAGTCTTTTTGAAGAGACCACCCTAGATGGTGATCACTGAGGTTTCATTGAATGCAGTGCTTTTACACGTTATATGATTTATGTATTTCAAATTTGGTTGCTATCTTAGTAGAAAACCGTTTTAATTCAATTGAGATGTTTAAACCTGGTTTGATTATTGTTTTGTAATTGTTGTTTTTGGTTGGTGTAAGTTTGCCAATATATTCAAAGATTTAAGATATATAACATTAAGAGAGAATATTTACTGTCTATGTCATTGTCATTCCTCAGAGACCACATTACATTAATGACAGTAACACAGAACTAATGACAGTTCAAGTGAAAACTGCTGAATgacttttgtaataaaaaaaaaatgcactaagATCTAACATGACAAACTGCAAAAGCCtgtaaaagaaataaaagctTGGAACGTTGTCTTTTATTAAA
>TCONS_00010092
aaagaagaagaagaaagtagtagtagaagaagaagaagaagaagaagaaacagattattgtttttaaagagttTGAAAGTTATAGGTTGATGTGGAGATTCTGCATGTGAAGTCCGCTTTTACAGTTTCTTAATTCGAAACAAGTTTGTTGATGCTCTAGTACTTCAGAAGGTTTGATTGTGCATTTCCTATGTCGACATCCCATCAAACACCTGTGGTTAGCAGCACCCCTCTCCCACTGCCTACCCACTTCTCTAATGCTCAGCATTCTATTACTGTTAAGAAAAGAAAACCTCCCTTTTCTAACTTATCAGATTCCTCTCAGTCTCCTTCCCCACCATTATATCATAGTTTACCACCTCGGCCTCCATCTAAAGGATGCTCCCCAGTAAGTCGAGTGTTTCCTCATCGCTCCATTCAGTGGACACCTCTGTCACGCTCCCTTATAGAATCACCCCCTCCTCTCTCTGTGTATGACCCATCTCAACAACAGTCCTTTTTCAGCCAGTGCTTTACCAACCTGGGCCTGATTGGACGTGGTTCCTTTGGTGAGGTTTTTAAGGTGGTGAGTCTTACAGACAATTGTCAGTATGCTGTGAAGCGTTCTGTTCATCGTTTTCGTAGTGAGGTTGAACGAGCAAAAAGCATCACAGAGGCTTGGAATCATGAGGAACTTCACCCACATCCTTACATTCTGGGTTTTATTGCGGCTTGGGAGGAGGCCGGCCATCTCTACATACAGACTGAACTCTGCTGTACCAGTCTACTGCTATATGCCGAGGAAACACCATGTCACACTGGTGAGATGAGAGCTTGGGCATACCTGTGCGACATGCTGTCAGCACTAATTCACTTACATGACTGTGGGTTTGCTCATCTGGACATTAAACCCGCAAACTTTTTCATTACAAAGTCTGGACGGCTCAAACTGGGAGACTTTGGCTTGTTGATCAAGCTTCCTGCAAATGCTCAAAAACAAGTAAACGAGGAAAAGAGAGAaatgaaaaaagagagagatgatTTACAGGAAGGTGACCCAAGATATATGGCCCCCGAGCTATTGAGAGGAGACTATGGGACTGCTGCAGACATCTTTAGTTTGGGTATTTCTATCCTGGAGTTGGCCTGTAACATTGAGGTTCCTAAAGAAGGAGATGACTGGCAGCTGCTCCGAAACGGGCACTTACCAGAAGAATTCACTAATGTGCTTTCTGAAGAAATGCTGTATATACTACGACTTATGCTAACCCCAGAACCCTGCAACAGAGCCACTGCACAGCAGCTGCTCTCTTTGCCCTTTGTACGCAAACACAAGTGGAAACGGCATCTTTATCTTTGCATCATTGAGAGCTTCCTGACCTTATTTCAGTGGAGTCAGTCCCTTTTTTATGGTAGTTGGAATTTTATATCCTCTCTCAGTCTGCTGTTTAAGACCCCTGTCTCTGAGTCGTCCTTATCAACCAGTACTCCTCCAAGAGAGAGATGGGAGAGAGATGCAGACATAAGCAACATTCAGTCATACTCGGAAAGCCCCATTCATCACTGTGTGTTCCCTCCAGATGTTTCTGAACACTCACCAACCTACACGCACAGAGTCCAGTCAAGGCTATCTTCTGGGAGTACTTCTACTCTACTTCCCGAATCAGACAATGATGTCATAGATGCATCATCACACAACCAGTGCATACCCTCTCCCCCCAGAAGCCattacagcagcagcagcagcttgaTTCATAACAAACTCACAGACTCACTGTGTATCCATGAAAGAGACACTGAACTGTCTAAAAGAAACTTTGAGCCAAAGAACTTGCTAAGTCTTTTTGAAGAGACCACCCTAGATGGTGATCACTGAGGTTTCATTGAATGCAGTGCTTTTACACGTTATATGATTTATGTATTTCAAATTTGGTTGCTATCTTAGTAGAAAACCGTTTTAATTCAATTGAGATGTTTAAACCTGGTTTGATTATTGTTTTGTAATTGTTGTTTTTGGTTGGTGTAAGTTTGCCAATATATTCAAAGATTTAAGATATATAACATTAAGAGAGAATATTTACTGTCTATGTCATTGTCATTCCTCAGAGACCACATTACATTAATGACAGTAACACAGAACTAATGACAGTTCAAGTGAAAACTGCTGAATgacttttgtaataaaaaaaaaatgcactaagATCTAACATGACAAACTGCAAAAGCCtgtaaaagaaataaaagctTGGAACGTT

Function

symbol description
pkmyt1 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in meiotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in nucleus. Orthologous to human PKMYT1 (protein kinase, membrane associated tyrosine/threonine 1).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0051321 meiotic cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060810-80 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in meiotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in nucleus. Orthologous to human PKMYT1 (protein kinase, membrane associated tyrosine/threonine 1).

Ensembl:

ensembl_id ENSDARG00000074730

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010091 False 2291 mRNA 0.42 8 14965587 15002563
TCONS_00010092 True 2234 mRNA 0.42 8 14965600 15002619

Neighbor

gene id symbol gene type direction distance location
XLOC_005241 neurod2 coding downstream 42632 14920088 ~ 14922955 (-)
XLOC_005240 NA coding downstream 125028 14839787 ~ 14840559 (-)
XLOC_005239 FO704673.1 coding downstream 414510 14545475 ~ 14551077 (-)
XLOC_005238 avl9 coding downstream 754294 14166036 ~ 14211293 (-)
XLOC_005237 NA coding downstream 821428 14138286 ~ 14144159 (-)
XLOC_005243 NA coding upstream 115268 15117887 ~ 15120113 (-)
XLOC_005244 NA coding upstream 122790 15125409 ~ 15126049 (-)
XLOC_005245 sult1st6 coding upstream 195238 15197857 ~ 15205087 (-)
XLOC_005246 NA coding upstream 239948 15242567 ~ 15244000 (-)
XLOC_005247 NA coding upstream 442955 15445574 ~ 15450258 (-)
XLOC_005224 NA non-coding downstream 1859364 13102866 ~ 13106223 (-)
XLOC_005222 BX572641.1 non-coding downstream 2630256 12335216 ~ 12335331 (-)
XLOC_005214 NA non-coding downstream 4192641 10769131 ~ 10772946 (-)
XLOC_005250 NA non-coding upstream 855113 15857732 ~ 15859869 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000161_00648949_00670470 PKMYT1 coding CI01000161 null 648468 ~ 670470 (-)