LOC117597933 (LOC108279645)


Basic Information

Item Value
gene id LOC117597933
gene name LOC108279645
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3248524 ~ 3249755 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117597933
GCTctgcgagtgtttatagccctgtgactttaacacttcatgactgagagctgctgctcagcaacttcacccacagcaaccatgactttgatcagcgtcttcatctgcacactggcccTCTGGACTCAAGGatccagaggtcaggtgactgtgactcaGACTCCTTCACAGCAAACTGTTGTTCCAGGAAACACAGTCACCATCAACTGTAGAACCAGTCTCAGAGTGTATAATGGTAATTTTCTACATTGGTACCtgcagaaacctggagaagctcctaaactcctgatctaTAGGGCTACTAGCTTATACTCAGGAACTCCAGCTCGTTTCACAGGCAGTGGATCTGATACTGActtcactctgaccatcagtggagtccagactgaagatgcaggagattacTACTGCCTTAGTGACCTTCAGATCCGTGGTGTCTCagtgttcacacagtgttagagcGTCGTACAAAAACCTCGGTCAGTGAGAGTGCACAGAGaagcactgctgcagctgggagcgactgcaggtgctgagggggAGGAAGTGATACaagacaatgacacacactgtggatGAGAGAAAACACATCATACTAAGAGGCCATgataatgcaaataaatatgCTCTCACTTGTATTAATCACTCTTTCCCCAATCTTAAGTAGATAGAATGGTATTCTAACTTCAGGCTAGTAAATAAACTTTGACAGTTGGCAGTTCAGATATTAGACCAATGTTAGTTTCTTTCAATTCAAAATGATGCCTTTTGGACTGGCATGCTATGCTGAAACGAACACCATCTCCATTAtcaacattttataaaaaaattaacattagctagctagctaacataggCAAATGCTGGTGTGGTTTCAGTAGCTTGCCAGGTTTGTAAGCTaactagctcatgttaatttaTACTTGTTTCTAGCTACTTAGTTAGATATCTAGCAAAGGTGCCCCTTAAACATATCCTGAGTGTCACCTATAGGCTGTAGCAGATATATTTAAGACAATACGTGATTGCTATGGAGCTCTTAAGTGATATCTTAcgtttaatacagagctttcatactgtTAAATATCAACATCTCCATGGGTTTTGGATTGCATAAATTGCAGATCATCATCAT

Function

NR:

description
PREDICTED: tyrosine-protein phosphatase non-receptor type substrate 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117597933 True 1135 V_segment 0.42 2 3248524 3249755

Neighbor

gene id symbol gene type direction distance location
slc39a7 slc39a7,LOC107395789 coding upstream 94678 3146038 ~ 3153846 (+)
rps18 rps18,LOC107726165,LOC107693766 coding upstream 124810 3118288 ~ 3123714 (+)
LOC113523850 NA coding upstream 187187 3055623 ~ 3061337 (+)
LOC117598055 NA coding upstream 350267 2893487 ~ 2898257 (+)
LOC117598059 LOC108274858,LOC108274862 coding upstream 492257 2753429 ~ 2756267 (+)
cratb cratb,LOC108274804,LOC108435838,LOC107561339,LOC107563340,LOC107758403,LOC107679039,LOC105903715 coding downstream 44044 3293799 ~ 3308324 (+)
ppt2b ppt2,LOC103364422 coding downstream 96817 3346572 ~ 3356643 (+)
rps5 rps5,LOC105903695 coding downstream 112645 3362400 ~ 3368547 (+)
LOC113523857 NA coding downstream 114460 3364215 ~ 3364348 (+)
LOC113523859 NA coding downstream 116370 3366125 ~ 3366258 (+)
G142524 NA non-coding upstream 18224 3229306 ~ 3230300 (+)
trnac-gca_3 NA non-coding upstream 29304 3219149 ~ 3219220 (+)
trnac-gca_2 NA non-coding upstream 31035 3217418 ~ 3217489 (+)
trnac-gca_1 NA non-coding upstream 32476 3215977 ~ 3216048 (+)
LOC117598172 NA non-coding upstream 32738 3204461 ~ 3215786 (+)
LOC113523833 LOC108279645 non-coding downstream 1630 3251385 ~ 3251999 (+)
trnac-gca_4 NA non-coding downstream 3272 3253027 ~ 3253098 (+)
trnac-gca_5 NA non-coding downstream 4797 3254552 ~ 3254623 (+)
trnac-gca_6 NA non-coding downstream 5513 3255268 ~ 3255339 (+)
trnac-gca_7 NA non-coding downstream 6755 3256510 ~ 3256581 (+)
LOC113523823 NA other upstream 215998 2431145 ~ 3032526 (+)
LOC117598067 NA other upstream 439887 2559811 ~ 2808637 (+)
LOC117598057 NA other upstream 555682 2687795 ~ 2692842 (+)
LOC117598105 NA other upstream 689797 2373223 ~ 2558727 (+)
LOC117598104 LOC108274858,LOC108274862,LOC108261310,LOC108274845 other upstream 770566 2475158 ~ 2477958 (+)
LOC113523845 NA other downstream 134425 3384180 ~ 3396067 (+)
G142576 NA other downstream 147915 3397670 ~ 3462171 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other downstream 1235078 4484833 ~ 4509248 (+)
gpx3 gpx3 other downstream 2491152 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 3337456 6587211 ~ 6593605 (+)

Expression


Co-expression Network