LOC117598023 (LOC108274854)


Basic Information

Item Value
gene id LOC117598023
gene name LOC108274854
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 867669 ~ 869091 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598023
ATGTATCACTGTGGCTCACTTTTCGATGGAGGAACCAAACTGATCATCAAAACCGGTCCCACGGTGAAGCCCTCCGTGTCtctgctccctccctcctctctgcagctgtctgagggatcggcctcgctgctctgcctgctgtctgCCTACTCTCCACAGGGGGCGCTGGTGAGCTGGACAGTGGATGGCTCCCAGGTGAAGGACGGGGTTCTGACCAgcgcagaagaacagaagaaggacggttacacacgcagcagcaccctgaccctcagcaaagCGCTCTgggaaaagggggaggagttTGTCTGTACGGTCTCCCATGCCGGGCCAATCATCCGGTCACGTTCAGAAAGAGCCAGTGTGAAGCCTAACAGCTCCAAGATACAATTTAACACTGAGCTGCTTACACATCCATCTACAATAGAGTTTCAGTTCtacacaatgctgacatttctgtctttactctcttcactgtcctgttgctcttcctgtagttttgctctgctgaaataaagcttcattttgga

Function

NR:

description
PREDICTED: signal-regulatory protein beta-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598023 True 527 C_region 0.53 2 867669 869091

Neighbor

gene id symbol gene type direction distance location
LOC113525101 NA coding upstream 423221 438027 ~ 444448 (+)
LOC113525100 LOC108274824 coding upstream 537685 324146 ~ 329984 (+)
LOC113525382 gja9 coding upstream 734262 127708 ~ 133407 (+)
fabp10b LOC108274544 coding upstream 740331 115546 ~ 127338 (+)
LOC113525374 LOC108274795 coding upstream 752733 102820 ~ 114936 (+)
LOC113523903 LOC108274807 coding downstream 593354 1462445 ~ 1473080 (+)
LOC113523877 NA coding downstream 627382 1496473 ~ 1505004 (+)
LOC113523893 mterf1 coding downstream 665776 1534867 ~ 1540467 (+)
LOC113523867 tmem42,LOC108274871,LOC103045080,LOC107394544 coding downstream 721767 1590858 ~ 1597758 (+)
ehmt2 ehmt2 coding downstream 753675 1622766 ~ 1646549 (+)
LOC117598141 LOC108274854 non-coding upstream 16679 849559 ~ 850990 (+)
G141826 LOC108274854 non-coding upstream 16708 832092 ~ 850961 (+)
G141847 LOC108274854 non-coding upstream 21179 831285 ~ 846490 (+)
LOC117598146 NA non-coding upstream 33941 832226 ~ 833728 (+)
G141846 NA non-coding upstream 48582 818601 ~ 819087 (+)
LOC117598143 LOC108274854 non-coding downstream 17261 886352 ~ 895604 (+)
LOC117598137 LOC108274854 non-coding downstream 34692 903783 ~ 905253 (+)
G141854 LOC108274854 non-coding downstream 48908 917999 ~ 919272 (+)
LOC117598139 NA non-coding downstream 122906 991997 ~ 993469 (+)
LOC117598132 NA non-coding downstream 156033 1025124 ~ 1025991 (+)
G141823 LOC108274854 other upstream 125468 674232 ~ 742201 (+)
G141647 NA other upstream 632148 212948 ~ 235521 (+)
G141566 LOC108274831 other upstream 771609 93086 ~ 96060 (+)
G141825 LOC108274854,LOC108279645 other downstream 69624 938715 ~ 1209873 (+)
LOC117598144 NA other downstream 72632 941723 ~ 979635 (+)
dus3l dus3l other downstream 679166 1548257 ~ 1559910 (+)
G142093 LOC108274838 other downstream 742420 1611511 ~ 1613336 (+)
LOC113523891 ehmt2 other downstream 746052 1615143 ~ 1622790 (+)

Expression


Co-expression Network