LOC117598035


Basic Information

Item Value
gene id LOC117598035
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 6855190 ~ 6856803 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598035
ATGGTTTACAGCAGCAGGGTTTTTGTACAGCCATTAAACCTGTTTGTATCACTGTGGGTCACTTTTGGTGGAGGAACCAAACTGTCTGTGGGCCgtcttACCCAGCCCACTGTGACAGTTCTGCCTCCCTCCAGTGTGGACCTGCAGCAGGAGAAGGTCACACTCATGTGTGTGGCCTATAAGGGCTTCCCCTCGGACTGGAGGCTGAGCTGGAAGGTTGATGGGAGCAGCTTGAGCTCGGGGGAGAGCCACGGCACCGCCGTTCTGCACACGGACGGCCTCTACAGCTGGAGCAGCACGCTGAGCATCCACCCGGAGCAGTGGAGGAACAAGGTGGTGACCTGTGAGGCCTCCAATGACAACCAACCTCCTGTGGTGAGCTCAGTAGACAGAGAGCAGTGCCAAGAGctgtgagctcacacacactttactcagCTCACCTTCTACTGCTTcactgtgtgttcactgtgtggcCCACTTTCATAATTTCAAGTGCGTTATTAACGGgagctcacacactcctcagttTAAAtcagctcttcttcttcattatcACCTAAatatgtgttaagtgtgtgtatcACTGCAATGTTCTGCtttgaattattaataaaagcCTTTGAATCAGTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598035 True 632 C_region 0.51 3 6855190 6856803

Neighbor

gene id symbol gene type direction distance location
LOC113547131 LOC108274606,LOC108435620 coding upstream 121276 6692793 ~ 6733914 (+)
LOC117598051 LOC108274605 coding upstream 175021 6679484 ~ 6680169 (+)
LOC113547127 LOC108274605,LOC108435589 coding upstream 175864 6605821 ~ 6679326 (+)
proza proza,LOC108275052,LOC108438900,LOC107576663 coding upstream 439804 6404746 ~ 6415386 (+)
ndufb9 ndufb9 coding upstream 552625 6297766 ~ 6302565 (+)
LOC113529730 herpud2,LOC108275212,LOC105897640,LOC107686057 coding downstream 396517 7253320 ~ 7264696 (+)
LOC113529540 cfap69 coding downstream 525275 7382078 ~ 7400425 (+)
sfxn1 LOC108275306,LOC108435595,LOC107668583,LOC107749734,LOC107594876,LOC107594919 coding downstream 544694 7401497 ~ 7418528 (+)
LOC113529491 LOC108275229,LOC103023804,LOC103475354 coding downstream 566066 7422869 ~ 7434230 (+)
ccng1 ccng1,LOC107745080 coding downstream 582892 7439695 ~ 7444266 (+)
LOC117598034 NA non-coding upstream 11226 6841937 ~ 6843964 (+)
LOC117598033 NA non-coding upstream 15770 6837055 ~ 6839420 (+)
LOC113529732 NA non-coding upstream 20741 6830592 ~ 6834449 (+)
G144359 NA non-coding upstream 28282 6807971 ~ 6826908 (+)
LOC117598166 NA non-coding upstream 39254 6813294 ~ 6815936 (+)
LOC117598164 NA non-coding downstream 12456 6869259 ~ 6870503 (+)
LOC117598165 NA non-coding downstream 14329 6871132 ~ 6899792 (+)
LOC117598168 NA non-coding downstream 19423 6876226 ~ 6877268 (+)
LOC113529731 NA non-coding downstream 23854 6880657 ~ 6882164 (+)
LOC117598150 NA non-coding downstream 50386 6907189 ~ 6908576 (+)
LOC117598156 NA other upstream 56286 6796972 ~ 6798904 (+)
LOC113547145 NA other upstream 69753 6783516 ~ 6785437 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other upstream 261585 6587211 ~ 6593605 (+)
gpx3 gpx3 other upstream 1107246 5740907 ~ 5747944 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 2345942 4484833 ~ 4509248 (+)
trnaw-cca_10 NA other downstream 94269 6951072 ~ 6951422 (+)
trnaw-cca_11 NA other downstream 95999 6952802 ~ 6952873 (+)
trnaw-cca_12 NA other downstream 99642 6956445 ~ 6956516 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other downstream 591067 7447870 ~ 7466552 (+)
G145233 LOC107676291 other downstream 1984673 8841476 ~ 8842266 (+)

Expression


Co-expression Network