LOC117598158


Basic Information

Item Value
gene id LOC117598158
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 6867836 ~ 6868544 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>LOC117598158
TTGGCAGCACATGCTTCAGTGCTCTGGGAGTGTTTATAGcgctgtgactttaacacttcatgactcagagctgctgctacagCAACTTCACCCACAGCTACCATGACTTTGATCCCCGTCTTCATCTGGACACTGATCTTCTGGACTCAAGaatgcAGAGGTCAAGTCACAGTAACTCAGActcctgcagtgaaatctgCTCTTCCAGGAGAAACAGTCACCATCAACTGTAGAATCAGTCAGGCAGTGTACAAGGGCTCATCTGGTGAGGAGTTACACTGGTATCagcagaaacctggagaagctcctaaactcctgatTAAACTTGCGAATCAGTTACAGTCAGGTTttccagctcgtttcagtggcagtggatctggatctgatttcactctgaccatcagtggagtccagactgAAGATGCAGCAGATTACTACTGTAAGAGTTGGCATTCCATCAGTAGCACCTGGTACTAACACAGTGTTATAGAGTCGTACAAAAACCTCCCTCAGTCAGATTGTAGAGAGActgcactgctgcagctgggagcgactgcaggtgctgagTTGGAGGATGTGATACGACACAATGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC117598158 True 594 V_segment 0.48 2 6867836 6868544

Neighbor

gene id symbol gene type direction distance location
LOC113547125 LOC108274607,LOC108442489 coding downstream 294491 6545934 ~ 6573345 (-)
LOC113547134 LOC108274609 coding downstream 327237 6493110 ~ 6540599 (-)
LOC113547104 NA coding downstream 417954 6443703 ~ 6449882 (-)
LOC113547105 LOC108275051 coding downstream 466444 6355990 ~ 6401392 (-)
LOC113547133 LOC108274502,LOC108442482,LOC102793828 coding downstream 512827 6348082 ~ 6355009 (-)
dnajc8 dnajc8,LOC102775708 coding upstream 55077 6923621 ~ 6930595 (-)
hnrnpr hnrnpr,LOC103029778,LOC105909056 coding upstream 72152 6940696 ~ 6949631 (-)
LOC113530221 LOC108274509,LOC108435612,LOC107571533,LOC107571277,LOC107730909 coding upstream 110686 6979230 ~ 7001721 (-)
LOC113529647 LOC108275213,LOC108435610 coding upstream 396920 7265464 ~ 7312016 (-)
LOC113529526 LOC108275095 coding upstream 481189 7349733 ~ 7364023 (-)
LOC113529528 NA non-coding downstream 5229 6861719 ~ 6862607 (-)
LOC117598151 NA non-coding downstream 13176 6854078 ~ 6854660 (-)
LOC117598161 NA non-coding downstream 17129 6850059 ~ 6850707 (-)
LOC117598162 NA non-coding downstream 25867 6840093 ~ 6841969 (-)
LOC117598154 NA non-coding downstream 30636 6835320 ~ 6837200 (-)
LOC113523889 NA non-coding upstream 5798 6874342 ~ 6875774 (-)
LOC117598159 NA non-coding upstream 10624 6879168 ~ 6879880 (-)
LOC113530118 NA non-coding upstream 23600 6892144 ~ 6894392 (-)
LOC117598036 NA non-coding upstream 32939 6901483 ~ 6902209 (-)
LOC117598153 NA non-coding upstream 37296 6905840 ~ 6906508 (-)
G144396 NA other downstream 35138 6827683 ~ 6832698 (-)
LOC117595715 NA other downstream 71077 6796026 ~ 6796759 (-)
LOC113547144 NA other downstream 79873 6787275 ~ 6787963 (-)
LOC113547143 NA other downstream 84505 6771361 ~ 6783331 (-)
rnf139 rnf139,LOC102794406 other downstream 581257 6268099 ~ 6286579 (-)
atp5if1a atpif1,LOC105912502,LOC107730904,LOC106588193 other upstream 89686 6958230 ~ 6961934 (-)
LOC113529729 dpy19l4 other upstream 453661 7322205 ~ 7345306 (-)
nudcd2 nudcd2 other upstream 571118 7439662 ~ 7446817 (-)
zgc:110843 LOC108274783,LOC103035656 other upstream 1028929 7897473 ~ 7903706 (-)
adra2da LOC108275442,LOC108430987 other upstream 1686697 8555241 ~ 8557399 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) LOC111193076 NA coding NC_035904.1 CM008307.1 4956279 ~ 4957026 (+)