G141738


Basic Information

Item Value
gene id G141738
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 588877 ~ 590364 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU167588
AAGGAATTTAacttggtatgaagcttccagaacacacatgcaaataagatggcaagacatattattattatttgtaaatttgatTATTATAAGAGAGAACAGGCTTAAATGGAACAGATATATGGACAGATATAATACTGTGCAAGGTGAAGGCAATGAGGTGAAGGCAGTGGCACAAGCATTAAGGATATGTGTACAGGTAATACGGTAAAGAATGAATTTACATACTGCACAAAAAATTGTATCCACAGAGAAGTAATACATTAAGAAGGATCTAGAAGTAGTTAACTGTTCCTGAGGGAAATGGCTTGTGGGAAAACGCTGTTCTTGTGCCTGCTTGTTCCAGTGGTCAGGGCTCTGAGGCGCCGGCCGCAGGGCAACAGGACTTACTACAGGCTGGGCAGATGTTAGTTTCTGCCTGTATGAACTAGGCAGTGATCGGAGAGTCCCAAAGCTGCTCTGGGAACCTCCTTTGCTCTGTTAAAATCAGCAAGAATAATAGTAAGTGAGTTGGGatgatgtctctgtgtgtgtgtgtaatctgatcAGCCAGCTTTTGCAGCGCTGTGCTCGTGCAGGCTTGAGGAGGGATGTAAACATTCACCACAATGAACGAGGAAAACTCGCTGCGGCGAATAAAAAGGCTTGCAGCTGATGAGGAGCGCGTCTGTGTCAGCACAGCATATCTTCTTCAACACTGTTATATCAGTGCACCAACTGCACCAACCAGCTGGAAGCCCGGCAGATGTATagcccatttatagttacatttattgctgTGGAATGTGGGTGAAACTTacgtcgcttacgttatagcagctgtaaacagttgtttcctcaccagcctcttttttctctctcttcaagttaataagataaaaaacaaacacagcttgttacgcatgaaaccgcaaagaagcgtaaactcctctgtcctgaagacgtcggaaaacttaaagttccagctttacctctgactgttacaaagcgctgacactggagactccttccataaatgttacataaatgtctccttactttaagaagaCTTCATATCAGTGATTTTTCCTACTatagaaaacattttcagataatttaaaaatgataatcaatatacaatacaataaaaagaagactttaaaatgcttcaCAGATTGAGGCAGTGATCTCAAGGATCCAAGTTTGGCACAGGTGAAAAAAATACTGTTCTGAGACTGAATACTGTGTGATATTCCACATATTCTGAGCTGAAAAGCTTATAGAACAGACGTTAATGTTCGTCCTGAGAAAAAGTGTTTGTTCTTCATATCATAATGAAAGGAATACAGTTTGCCAGTTTGCTTGGAGTGTAATATACTGCACTGCAGATTATGTGCCTGGGTCCTGATGGGAATATCGTACATCATTCCGGATCAAAACCACAGAacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU167588 True 1428 lncRNA 0.41 2 588877 590364

Neighbor

gene id symbol gene type direction distance location
LOC113525101 NA coding upstream 144429 438027 ~ 444448 (+)
LOC113525100 LOC108274824 coding upstream 258893 324146 ~ 329984 (+)
LOC113525382 gja9 coding upstream 455470 127708 ~ 133407 (+)
fabp10b LOC108274544 coding upstream 461539 115546 ~ 127338 (+)
LOC113525374 LOC108274795 coding upstream 473941 102820 ~ 114936 (+)
LOC113523903 LOC108274807 coding downstream 872081 1462445 ~ 1473080 (+)
LOC113523877 NA coding downstream 906109 1496473 ~ 1505004 (+)
LOC113523893 mterf1 coding downstream 944503 1534867 ~ 1540467 (+)
LOC113523867 tmem42,LOC108274871,LOC103045080,LOC107394544 coding downstream 1000494 1590858 ~ 1597758 (+)
ehmt2 ehmt2 coding downstream 1032402 1622766 ~ 1646549 (+)
G141711 NA non-coding upstream 86471 415274 ~ 502406 (+)
G141726 NA non-coding upstream 95459 492911 ~ 493418 (+)
G141687 NA non-coding upstream 143378 344269 ~ 445499 (+)
LOC117598045 NA non-coding upstream 209750 376387 ~ 379127 (+)
G141694 NA non-coding upstream 232079 355404 ~ 356798 (+)
LOC117598182 NA non-coding downstream 10509 600873 ~ 608245 (+)
LOC117597935 LOC108274854 non-coding downstream 85460 675824 ~ 677329 (+)
LOC113525695 LOC108274854 non-coding downstream 134195 724559 ~ 725725 (+)
LOC117598010 LOC108274854 non-coding downstream 150465 740829 ~ 742229 (+)
LOC117598011 LOC108274854 non-coding downstream 159331 749695 ~ 752390 (+)
G141647 NA other upstream 353356 212948 ~ 235521 (+)
G141566 LOC108274831 other upstream 492817 93086 ~ 96060 (+)
G141823 LOC108274854 other downstream 83868 674232 ~ 742201 (+)
G141824 LOC108274854 other downstream 176691 767055 ~ 895584 (+)
LOC117598023 LOC108274854 other downstream 277305 867669 ~ 869091 (+)
G141825 LOC108274854,LOC108279645 other downstream 348351 938715 ~ 1209873 (+)
LOC117598144 NA other downstream 351359 941723 ~ 979635 (+)

Expression


Co-expression Network