G141847 (LOC108274854)


Basic Information

Item Value
gene id G141847
gene name LOC108274854
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 831285 ~ 846490 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU167752
GACTTTTGCTCTCAAATACATGTTgtttgtttgagtgtgtgtgtgtgtggagtagtgagtgtgttgtgtgtagtgtttgtgtgtggcgttgtgagtgtgttgtgtgtagtgtttgtgtgtgtatgtgtgtatagagtagtgagtgagtgagtgtgtgttctcctccacagtgtgtgtcattgtgctgtatcacatcgtccccctcagcacctgcagtaggtcccagctgcagcagtcacactcacccaggtttttgtacgacgctctaacactgtgtgaacacaTAGCTACTACTGATATAATGGAAACTCTGACAGTAATaatctccagcatcttcagcctggactccactgatggtcagagtgaaatcagatccagatccactgccactgaaacgagctggaaAACCTGATTCTCTTTCATTAGCCCAAtagatcaggagtttaggagcttctccagcTTTCTGCTGATACCAGGACAAACAGTCATAGCTACCACCACAACTATCATAAACAGCAGAGCTGGTTTTACagctgatggtgagtgtgtctcctggagaaacagatttcactgcaggactctgagtcacagtcacctgacctctggatcctgaaaaaaataagaagaataaatccGTTCcctacattaataatgatgttgaGTATAAAGTTCATCTAGTCGGCCTACTTCACATGGATTTG

Function

NR:

description
PREDICTED: signal-regulatory protein beta-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU167752 True 701 lncRNA 0.45 2 831285 846490

Neighbor

gene id symbol gene type direction distance location
LOC113525101 NA coding upstream 386837 438027 ~ 444448 (+)
LOC113525100 LOC108274824 coding upstream 501301 324146 ~ 329984 (+)
LOC113525382 gja9 coding upstream 697878 127708 ~ 133407 (+)
fabp10b LOC108274544 coding upstream 703947 115546 ~ 127338 (+)
LOC113525374 LOC108274795 coding upstream 716349 102820 ~ 114936 (+)
LOC113523903 LOC108274807 coding downstream 615955 1462445 ~ 1473080 (+)
LOC113523877 NA coding downstream 649983 1496473 ~ 1505004 (+)
LOC113523893 mterf1 coding downstream 688377 1534867 ~ 1540467 (+)
LOC113523867 tmem42,LOC108274871,LOC103045080,LOC107394544 coding downstream 744368 1590858 ~ 1597758 (+)
ehmt2 ehmt2 coding downstream 776276 1622766 ~ 1646549 (+)
G141846 NA non-coding upstream 12198 818601 ~ 819087 (+)
LOC117598138 LOC108274854 non-coding upstream 19089 810700 ~ 812196 (+)
LOC117598011 LOC108274854 non-coding upstream 78895 749695 ~ 752390 (+)
LOC117598010 LOC108274854 non-coding upstream 89056 740829 ~ 742229 (+)
LOC113525695 LOC108274854 non-coding upstream 105560 724559 ~ 725725 (+)
LOC117598141 LOC108274854 non-coding downstream 3069 849559 ~ 850990 (+)
LOC117598143 LOC108274854 non-coding downstream 39862 886352 ~ 895604 (+)
LOC117598137 LOC108274854 non-coding downstream 57293 903783 ~ 905253 (+)
G141854 LOC108274854 non-coding downstream 71509 917999 ~ 919272 (+)
LOC117598139 NA non-coding downstream 145507 991997 ~ 993469 (+)
G141823 LOC108274854 other upstream 89084 674232 ~ 742201 (+)
G141647 NA other upstream 595764 212948 ~ 235521 (+)
G141566 LOC108274831 other upstream 735225 93086 ~ 96060 (+)
LOC117598023 LOC108274854 other downstream 21179 867669 ~ 869091 (+)
G141825 LOC108274854,LOC108279645 other downstream 92225 938715 ~ 1209873 (+)
LOC117598144 NA other downstream 95233 941723 ~ 979635 (+)
dus3l dus3l other downstream 701767 1548257 ~ 1559910 (+)
G142093 LOC108274838 other downstream 765021 1611511 ~ 1613336 (+)

Expression


Co-expression Network