G141889


Basic Information

Item Value
gene id G141889
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 1178968 ~ 1222490 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU167801
GAAGTAAGGTAGAAAGTAGATAAATGATTGAACATAGGAATCTATAaaatagcaaaaagaaaaaagtacctTTTCTTCATAAGGGTAGTCAGCATCAGTGCTGATTCCATTGTggtttataatgtaattaaaggCATTAGTCATGAGTCCTCCATGGCAGCCATGGTTTCCCTCCGTACTACTGCAGTCTATCAGGTTCTGAACACTCAGAGGAACAAGCGGACtcttctttttcatcatttGAGCTTCTAAAGCTCCAACAGCACTGAACGCCCAGCATGCATTGCAATCACCCTACATAcagccaaacacaaacacatgaagtgaagatacactatatggacaaaagtattgggaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU167801 True 359 lncRNA 0.40 2 1178968 1222490

Neighbor

gene id symbol gene type direction distance location
LOC113525101 NA coding upstream 734520 438027 ~ 444448 (+)
LOC113525100 LOC108274824 coding upstream 848984 324146 ~ 329984 (+)
LOC113525382 gja9 coding upstream 1045561 127708 ~ 133407 (+)
fabp10b LOC108274544 coding upstream 1051630 115546 ~ 127338 (+)
LOC113525374 LOC108274795 coding upstream 1064032 102820 ~ 114936 (+)
LOC113523903 LOC108274807 coding downstream 239955 1462445 ~ 1473080 (+)
LOC113523877 NA coding downstream 273983 1496473 ~ 1505004 (+)
LOC113523893 mterf1 coding downstream 312377 1534867 ~ 1540467 (+)
LOC113523867 tmem42,LOC108274871,LOC103045080,LOC107394544 coding downstream 368368 1590858 ~ 1597758 (+)
ehmt2 ehmt2 coding downstream 400276 1622766 ~ 1646549 (+)
LOC117598126 NA non-coding upstream 75705 1102632 ~ 1103263 (+)
LOC117598117 LOC108274854 non-coding upstream 97489 1026987 ~ 1081479 (+)
LOC117598132 NA non-coding upstream 152977 1025124 ~ 1025991 (+)
LOC117598139 NA non-coding upstream 185499 991997 ~ 993469 (+)
G141854 LOC108274854 non-coding upstream 259696 917999 ~ 919272 (+)
G141930 eomes,LOC108274799 non-coding downstream 91091 1313581 ~ 1319559 (+)
G142051 LOC108274817,LOC108274818,LOC108274837 non-coding downstream 205511 1428001 ~ 1832071 (+)
G142058 NA non-coding downstream 254490 1476980 ~ 1478639 (+)
G142062 NA non-coding downstream 258220 1480710 ~ 1482647 (+)
G142074 LOC108274826 non-coding downstream 287493 1509983 ~ 1515675 (+)
LOC117598144 NA other upstream 199333 941723 ~ 979635 (+)
G141824 LOC108274854 other upstream 283384 767055 ~ 895584 (+)
LOC117598023 LOC108274854 other upstream 309877 867669 ~ 869091 (+)
G141823 LOC108274854 other upstream 436767 674232 ~ 742201 (+)
G141647 NA other upstream 943447 212948 ~ 235521 (+)
dus3l dus3l other downstream 325767 1548257 ~ 1559910 (+)
G142093 LOC108274838 other downstream 389021 1611511 ~ 1613336 (+)
LOC113523891 ehmt2 other downstream 392653 1615143 ~ 1622790 (+)
LOC113524920 NA other downstream 832541 2055031 ~ 2085878 (+)
LOC113545687 NA other downstream 846748 2069238 ~ 2183053 (+)

Expression


Co-expression Network