G142052 (LOC108274818,LOC108274817)


Basic Information

Item Value
gene id G142052
gene name LOC108274818,LOC108274817
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 1703888 ~ 1719950 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU168037
CAGCCATGTCtccactgaagaacatgaagGTCTGAAATGGAGACGGTGCAGTGAAGATAATGACTGTCTGACACTAAACATTAAGAATCATAAAGAAATGACCCCTGCCCTTTTATGAGTAATGATGAAGAGAATTGACTAACCAGACTTATTGTGTCTCATTCGGTCCATCAGGATGTCCACGTTGACCTTAAACCACTGCTCTTTGCTCTTGCGGGACTGAGTGCCTTTATCCCAGTAATCCTGTGGCATCTTCTCTCTCATCCAGTTCTGTTTAGGAACCTTAGCCTGAGTCTTGCTGCTGTAGTAGTCGAGTTCTCGGTCATTGAGCATGCCCAGTGCAGTGAACTCATAGATGCCGGGGAGATTGAGAGGTTTAGAGAGAGCCGTGTAGGTGTAATACAGAGAGTGCTCACCTGGAGGAGATGTATAAGAAGATCATTTTACTAACTTTCACTTTTGTTTGAAACCAAATCCTGTCTGAAATTTCACACTTGCATTGCTCTTCTGTTTAAACATTCACATTGTACACGCAGCTTTAATACAACGCAAGCAGGTTTAGCTGTACTAGACTGATGCGCATGTGGAGCTTCTGTGCCCCACCGAAACAGGTCAAAATGGATATCTTTTGGCTTCTGATCATCTT

Function

NR:

description
PREDICTED: major histocompatibility complex class I-related gene protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168037 True 646 lncRNA 0.44 2 1703888 1719950

Neighbor

gene id symbol gene type direction distance location
slc44a4 NA coding upstream 21095 1647724 ~ 1682793 (+)
ehmt2 ehmt2 coding upstream 57339 1622766 ~ 1646549 (+)
LOC113523867 tmem42,LOC108274871,LOC103045080,LOC107394544 coding upstream 106130 1590858 ~ 1597758 (+)
LOC113523893 mterf1 coding upstream 163421 1534867 ~ 1540467 (+)
LOC113523877 NA coding upstream 198884 1496473 ~ 1505004 (+)
LOC113524921 NA coding downstream 253582 1973532 ~ 1998149 (+)
LOC113524922 NA coding downstream 286116 2006066 ~ 2033649 (+)
LOC113524923 NA coding downstream 316925 2036875 ~ 2053264 (+)
LOC113545587 LOC108274833 coding downstream 464773 2184723 ~ 2195601 (+)
lgals17 LOC108274834 coding downstream 486973 2206923 ~ 2217442 (+)
G142097 NA non-coding upstream 16223 1662088 ~ 1687665 (+)
G142074 LOC108274826 non-coding upstream 188213 1509983 ~ 1515675 (+)
G142062 NA non-coding upstream 221241 1480710 ~ 1482647 (+)
G142058 NA non-coding upstream 225249 1476980 ~ 1478639 (+)
G141930 eomes,LOC108274799 non-coding upstream 384329 1313581 ~ 1319559 (+)
G142055 NA non-coding downstream 1363 1721313 ~ 1778196 (+)
G142110 NA non-coding downstream 9207 1729157 ~ 1828083 (+)
G142112 NA non-coding downstream 39216 1759166 ~ 1774208 (+)
G142053 LOC108274818,LOC108274817,LOC108274837 non-coding downstream 42672 1762622 ~ 1795910 (+)
G142056 LOC108274837,LOC108274817,LOC108274818 non-coding downstream 64454 1784404 ~ 1819780 (+)
LOC113523891 ehmt2 other upstream 81098 1615143 ~ 1622790 (+)
G142093 LOC108274838 other upstream 90552 1611511 ~ 1613336 (+)
dus3l dus3l other upstream 143978 1548257 ~ 1559910 (+)
G141825 LOC108274854,LOC108279645 other upstream 494015 938715 ~ 1209873 (+)
LOC113524920 NA other downstream 335081 2055031 ~ 2085878 (+)
LOC113545687 NA other downstream 349288 2069238 ~ 2183053 (+)
LOC117597926 NA other downstream 550100 2270050 ~ 2271586 (+)
LOC117598179 NA other downstream 559129 2279079 ~ 2279887 (+)
LOC117598174 NA other downstream 568148 2288098 ~ 2291206 (+)

Expression


Co-expression Network